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spatialdata
An open and interoperable data framework for spatial omics data
https://spatialdata.scverse.org/
BSD 3-Clause "New" or "Revised" License
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SpatialData specs proposal
#12
giovp
closed
1 year ago
23
Io/hot fix
#138
LucaMarconato
closed
1 year ago
19
fix incremental update
#329
giovp
closed
4 months ago
18
New multiple table in-memory design
#298
LucaMarconato
closed
2 months ago
18
transform and models
#52
giovp
closed
1 year ago
18
enhance + bugfix of images and labels elements
#127
giovp
closed
1 year ago
17
type and storage of `instance_key` issues
#158
giovp
opened
1 year ago
16
`polygon_query()` cannot filter the table for CODEX data
#540
GuoshengMa
closed
3 weeks ago
15
Tutorial, tests and parser argument for channel names in images
#230
LucaMarconato
closed
1 month ago
14
[WIP] torch DataSet + utils
#145
kevinyamauchi
closed
1 year ago
12
reimplemented incremental io
#501
LucaMarconato
opened
1 month ago
11
Explicit intrinsic coordinate system for points and shapes
#169
ivirshup
opened
1 year ago
11
update points model
#113
giovp
closed
1 year ago
11
improviements to transforms: robustness and ergonomics
#100
LucaMarconato
closed
1 year ago
11
Influence on the order of axes when declaring different affine transformations
#39
LucaMarconato
closed
1 year ago
11
`contains_element` returns False if element is contained more than once
#425
aeisenbarth
closed
3 months ago
10
`transform()` function rotates shapes incorrectly -> incorrect extend
#353
timtreis
closed
7 months ago
10
Add image and polygons bounding box query
#105
kevinyamauchi
closed
1 year ago
10
transformations (wip)
#22
LucaMarconato
closed
1 year ago
10
Refactor writer and add reader
#14
giovp
closed
1 year ago
10
refactor data loader
#299
giovp
closed
5 months ago
9
Fix blobs
#282
melonora
closed
11 months ago
9
Support for consolidated remote zarr
#278
berombau
closed
10 months ago
9
update table model
#164
giovp
closed
1 year ago
9
Feature/polygon aggregations
#162
ivirshup
closed
1 year ago
9
IO for raster types failing under Ubuntu
#111
LucaMarconato
closed
1 year ago
9
modules import hierarchy
#103
giovp
closed
1 year ago
9
Resolve exceptions when adding labels to backed SpatialData
#348
aeisenbarth
closed
3 months ago
8
aggregation
#196
giovp
closed
1 year ago
8
Offset when rasterizing data
#165
LucaMarconato
opened
1 year ago
8
unify polygons and shapes elements
#132
giovp
closed
1 year ago
8
Pygeos version mismatch leads to poor performance or even fatal error
#63
LucaMarconato
opened
1 year ago
8
Discussion: docs framework and location
#51
kevinyamauchi
closed
2 months ago
8
Schemas?
#24
ivirshup
closed
1 year ago
8
Improve docs
#477
LucaMarconato
closed
1 month ago
7
Multi table
#410
melonora
closed
3 months ago
7
Allow force-overwriting existing files (non-backing)
#344
aeisenbarth
closed
4 months ago
7
Gitpod
#326
FloWuenne
opened
9 months ago
7
query.bounding_box - differing axes sizes when querying
#285
dylanclam12
closed
3 months ago
7
docs (#191)Co-authored-by: giovp <giov.pll@gmail.com>
#191
LucaMarconato
closed
1 year ago
7
Rows annotating multiple regions
#34
LucaMarconato
closed
2 months ago
7
Selecting rows in AnnData
#8
tischi
opened
1 year ago
7
Error with `polygon_qurey()` function
#532
GuoshengMa
closed
1 month ago
6
allow table to be None in get_values and _locate_values
#466
melonora
closed
2 months ago
6
SpatialData lacks Observation Window Metadata
#458
MobiTobi
opened
2 months ago
6
Made _locate_spatial_element public, renamed to locate_element()
#427
LucaMarconato
closed
3 months ago
6
Implement, and document in a notebook, an helper function for accessing levels of multiscale images
#355
LucaMarconato
opened
7 months ago
6
decompose affine into simpler transformations
#327
LucaMarconato
closed
6 months ago
6
Error in `Interactive` when going through the tutorial
#294
jefferyUstc
closed
10 months ago
6
Docs/improvements
#206
LucaMarconato
closed
1 year ago
6
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