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spatialdata
An open and interoperable data framework for spatial omics data
https://spatialdata.scverse.org/
BSD 3-Clause "New" or "Revised" License
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[pre-commit.ci] pre-commit autoupdate
#555
pre-commit-ci[bot]
opened
2 weeks ago
0
Can't save transformation result
#558
Ithinky
opened
1 week ago
3
Different epression plot from different get_cmap()
#557
Bioin-Mixologist
closed
1 week ago
1
Cannot be shown in transparent colors when Plotting the gene expression data
#554
Bioin-Mixologist
closed
1 week ago
3
Subset spatialdata by list of cell ids
#556
RAC1924
opened
1 week ago
0
Unknown normalization when rendering crops from spatial samples.
#553
rushin682
opened
2 weeks ago
1
polygon_query() throws AttributeError: 'NoneType' object has no attribute 'intersects' error
#552
olivermccallion
opened
2 weeks ago
0
update codecov
#550
giovp
opened
2 weeks ago
0
Replace SpatialImage and MultiscaleSpatialImage with DataArray and DataTree
#395
LucaMarconato
opened
6 months ago
0
reimplemented incremental io
#501
LucaMarconato
opened
1 month ago
11
Something wrong about annotating regions of interest with napari
#551
Tony4709
opened
2 weeks ago
0
Persist color channels in `rasterize()`
#544
clwgg
opened
1 month ago
0
Overlay custom shape onto cell boundaries from Xenium
#547
EST09
opened
3 weeks ago
2
drop unmaintained pygeos for shapely 2.0
#545
omsai
opened
3 weeks ago
4
Extract Image features from VisiumHD and Squidpy
#548
sokratiag
opened
3 weeks ago
1
Support remote private storage by consistent use of substore
#442
berombau
opened
3 months ago
2
[pre-commit.ci] pre-commit autoupdate
#543
pre-commit-ci[bot]
closed
2 weeks ago
0
Cannot aggregate Labels2DModel by ShapesModel
#546
GuoshengMa
opened
3 weeks ago
1
`polygon_query()` cannot filter the table for CODEX data
#540
GuoshengMa
closed
3 weeks ago
15
Remove `pygeos` dependency
#432
LucaMarconato
opened
3 months ago
1
automatic backing of sdata.tables
#498
ArneDefauw
opened
1 month ago
2
Feedback on concatenate()
#541
grst
opened
1 month ago
1
Support for private remote object storage
#441
berombau
opened
3 months ago
1
Prototype/geoparquet
#542
LucaMarconato
opened
1 month ago
0
Error with `polygon_qurey()` function
#532
GuoshengMa
closed
1 month ago
6
Update dependencies
#403
goanpeca
closed
1 month ago
2
Utils to turn all transformations to affine
#535
LucaMarconato
closed
1 month ago
1
Extract coordinates of shape after transformation
#539
EST09
closed
1 month ago
1
Invalid TIFF header
#536
minhtien-trinh
closed
1 month ago
4
Think I'd just made a mistake but can't delete sorry
#538
EST09
closed
1 month ago
0
Improve docs
#477
LucaMarconato
closed
1 month ago
7
Order of tutorial notebooks
#533
Zethson
closed
1 month ago
3
Failing join when index values are not unique
#531
melonora
closed
1 month ago
2
Extending get_values() for tables annotating points
#537
dylanclam12
opened
1 month ago
0
Parameter name `(target_|to_)?coordinate_system(s)?`
#534
LucaMarconato
opened
1 month ago
0
Aggregation tutorial reversed section titles
#337
ckmah
closed
1 month ago
1
Tutorial, tests and parser argument for channel names in images
#230
LucaMarconato
closed
1 month ago
14
fix models docstrings
#530
LucaMarconato
closed
1 month ago
1
Lazy loading of points and spatial index
#41
kevinyamauchi
opened
1 year ago
2
Adding New Shapes Layer Raises Terse Exception
#469
jeffquinn-msk
closed
1 month ago
5
Mixed polygon/multipolygon geometry types from disk
#529
LucaMarconato
opened
1 month ago
0
Custom spatialdata.models.ShapesModel throws "tuple index out of range"
#499
Artur-man
closed
1 month ago
2
Raster models validation should be a `classmethod`.
#528
LucaMarconato
opened
1 month ago
0
Missing `dtype` validation for labels?
#527
LucaMarconato
opened
1 month ago
0
Incremental io
#525
ArneDefauw
opened
1 month ago
0
ValueError: '_index' is a reserved name for dataframe columns when writing multiple tables in Zarr
#516
Bisho2122
closed
1 month ago
2
Replace some `AssertionError` with other exceptions
#483
LucaMarconato
opened
2 months ago
0
spatialdata-plot documentation hyperlink
#502
Artur-man
closed
1 month ago
1
Error in `add_shapes()` function
#524
GuoshengMa
closed
1 month ago
2
fixes on docs, updated notebooks
#523
LucaMarconato
closed
1 month ago
0
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