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sdparekh
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zUMIs
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
GNU General Public License v3.0
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BUG - zUMIs does not respect num_threads
#252
stetner
closed
3 years ago
4
How to deal with tolerating one mismatched base in each X-base barcode for reads?
#251
yiyelinfeng
closed
3 years ago
2
exiting because of fatal error in reads input
#250
hcph
closed
3 years ago
7
BUG When using fastq with no .gz suffixed, cell barcode can not be extracted.
#249
crotoc
closed
3 years ago
2
BUG splitfq.sh add an extra path to fastq file when fastq file is plain but not gz suffixed.
#248
crotoc
closed
3 years ago
1
'output_UMI/UMI.final_annot.gtf' does not exist
#247
cpattaroni
closed
3 years ago
6
How to explain the "User"
#246
yiyelinfeng
closed
3 years ago
2
Cells right to the blue line are selected
#245
yiyelinfeng
closed
3 years ago
1
Errors on zUMIs.sh: command substitution: line 235: `cut -d' ' -f1 <(echo ${fqfiles}))'
#244
loverlyday
closed
3 years ago
3
Errors right before summarizing stem
#243
curtisd0886
closed
3 years ago
7
Questions about the results of inDrop data
#242
shangyf-stu
closed
3 years ago
1
Can't RUN zUMIs
#241
Logancreator
closed
3 years ago
7
BUG Samtools related bug inDrops v3 samples
#240
droplet-lab
closed
3 years ago
1
Unable to load fcountsLib2
#239
Abonacolta
closed
3 years ago
5
How to deal with data after Trim
#238
shangyf-stu
closed
3 years ago
8
samtools failed to open "NA"
#237
zakieh-tayyebi
closed
3 years ago
4
BUGFATAL ERROR in reads input: quality string length is not equal to sequence length
#236
shangyf-stu
closed
3 years ago
2
one suggestion and one question
#235
shangyf-stu
closed
3 years ago
11
BUG
#234
shangyf-stu
closed
3 years ago
3
what's the problem in this screen?
#233
wajm
closed
3 years ago
7
My YAML file has an error! but I don't know the reason, can you help me?
#232
Some-is-thing
closed
3 years ago
2
zUMIs output format
#231
ysu2015
closed
3 years ago
2
SS3 HCA data
#230
vincenthahaut
closed
3 years ago
3
Samtools: error while loading shared libraries: libcrypto.so.1.0.0: cannot open shared object file
#229
ysu2015
closed
3 years ago
5
How to use in BD Rhapsody WTA?
#228
wajm
closed
3 years ago
4
Defined dependencies program paths have not been taken by zUMIs
#227
ysu2015
closed
3 years ago
11
BUG
#226
ysu2015
closed
3 years ago
0
2 errors reported after installation.
#225
ysu2015
closed
3 years ago
2
Error in .make_splicings
#224
bwfait
closed
3 years ago
5
Unable to load shared object
#223
bwfait
closed
3 years ago
3
samtools v1.2 is not compatible with empty UB and QU in bam
#222
yewero
closed
3 years ago
0
fcountsLib2 loading error and mclapply warning
#221
asalhab
closed
3 years ago
3
Error in uik() - Method is not applicable for such a small vector - inDrops Protocol
#220
saisomesh2594
closed
3 years ago
8
Can't run two samples in parallel
#219
zhanglab2008
closed
3 years ago
2
Error
#218
OliInTheValley
closed
3 years ago
6
ERROR: input is not BAM or CRAM
#217
arshiyaakeel
closed
3 years ago
2
How to create YAML file for more than 4 fastq files
#216
arshiyaakeel
closed
3 years ago
3
Unknown Errors - zUMIs v2.9
#215
saisomesh2594
closed
3 years ago
7
Demultiplex files does not show up
#214
taniachavarria79
closed
3 years ago
5
Understanding zUMI Output
#213
kerimsecener
closed
3 years ago
12
reproduce smart-seq3 data from the paper
#212
sanxiongliu
closed
3 years ago
8
BUG Error at counting stage after loading gtf file
#211
droplet-lab
closed
3 years ago
5
Compute cluster has ulimit set to just 8192. Code changes to accommodate demultiplexing SPLIT-seq data?
#210
jeremymsimon
closed
3 years ago
9
errors when running zUMIs using non-reference genome annotation
#209
olechnwin
closed
3 years ago
3
Using output files in Seurat
#208
curtisd0886
closed
3 years ago
4
EXITING: fatal input ERROR: runThreadN must be >0, user-defined runThreadN=0
#207
doctorasgr
closed
3 years ago
2
how to get a matrix contains all CB in the whitelist
#206
YOU-k
closed
4 years ago
12
How to include all barcodes from the 10X 3' version 3 whitelist
#205
TheSingleCell
closed
4 years ago
5
filtering error: broken pipe
#204
bettycatherine
closed
4 years ago
25
BUG: split: unrecognized option '--filter=pigz'
#203
wm-takara
closed
3 years ago
1
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