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sdparekh
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zUMIs
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
GNU General Public License v3.0
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Barcodes present in BCstats.txt, but not in final result.
#305
diyang1354
closed
2 years ago
1
Error in loadNamespace(x)
#304
xiaoyuppp
closed
2 years ago
1
How can I get mapping rate for each cell?
#303
diyang1354
closed
2 years ago
1
Question related to feature names of gene expression matrix.
#302
diyang1354
closed
2 years ago
1
yaml multimappers options
#301
mlizio
closed
2 years ago
1
how to use the UMI information of intron.exon
#300
zjwang6
closed
2 years ago
1
how to use the UMI information of intron.exon
#299
zjwang6
closed
2 years ago
2
Question: Does zUMIs perform any frameshift correction for SPLiT-seq?
#298
jeremymsimon
closed
2 years ago
2
Problems encountered in Smartseq3 data processing
#297
zmf0621
closed
2 years ago
10
Error in (function (cl, name, valueClass) :
#296
ytang0831
closed
2 years ago
3
Parsing out 5' UMI and internal reads in SmartSeq3 data
#295
pm-Genome2021
closed
2 years ago
4
zUMIs alignment error
#294
brain-discourse
closed
2 years ago
7
Read count table for intergenic, ambiguous, unmapped reads
#293
pm-Genome2021
closed
3 years ago
2
creating SJ.out.tab in zUMIs
#292
kwglam
closed
3 years ago
5
could not find function "read_yaml"
#291
brain-discourse
closed
3 years ago
17
Issue running zUMIs pipeline on Smartseq3 data
#290
pm-Genome2021
closed
3 years ago
1
Syntax error loading yaml file
#289
xuwanxing
closed
3 years ago
5
Syntax error loading yaml file
#288
xuwanxing
closed
3 years ago
0
samtools in miniconda looks problematic
#287
roxyisat-rex
closed
2 years ago
3
Trimmed FASTQ as inout to zUMIs
#286
hsriniva11
closed
3 years ago
8
Update zUMIs.sh
#285
xaviml
closed
3 years ago
1
Error with completion with bigger dataset
#284
mdhfz89
closed
3 years ago
10
suspect error with samtools from miniconda
#283
roxyisat-rex
closed
3 years ago
5
the result of example data is different
#282
zjwang6
closed
3 years ago
7
Error in if (!grepl("Filtering|Mapping|Counting|Summarising", inp$which_Stage, : argument is of length zero
#281
roxyisat-rex
closed
3 years ago
3
Sandberg lab zUMIs YAML included find_pattern for UMI?
#280
roxyisat-rex
closed
3 years ago
2
Processing microSPLIT data from SRA using zUMI
#279
mdhfz89
closed
3 years ago
4
One or more of your executables were not found.
#278
roxyisat-rex
closed
3 years ago
2
YAML config for merged demultiplex files
#277
roxyisat-rex
closed
3 years ago
5
double free or corruption in R
#276
YOU-k
closed
3 years ago
5
Expected bam outputs after running zUMIs?
#275
kwglam
closed
3 years ago
6
How to analyze the isforms of smart-seq3 data?
#274
yiyelinfeng
closed
3 years ago
1
converting loom files to seurat objects
#273
kwglam
closed
3 years ago
2
Reproducing HCA data using zUMI
#272
HaniJieunKim
closed
3 years ago
4
BD Rhapsody compatability
#271
alanaleah89
closed
3 years ago
2
Error writing bam files after finishing mapping.
#270
wsphillips
closed
3 years ago
2
Error with Smart-seq2 dataset
#269
juicejulia
closed
3 years ago
3
Error version problem
#268
hsriniva11
closed
3 years ago
14
zUMIs clarification for variable position cDNA sequence
#267
jelber2
closed
3 years ago
4
Bugfix: corrects for errors in counting with special characters
#266
TomKellyGenetics
opened
3 years ago
2
sci-RNA-seq with no separate FASTQs for index reads
#265
juicejulia
closed
3 years ago
7
zUMI STAR error by clip3pAdapterSeq
#264
MJ-Yang
closed
3 years ago
1
Error toward end
#263
Vgupta211
closed
3 years ago
8
Merging demultiplexed fastq files
#262
MJ-Yang
closed
3 years ago
1
Shebang line in perl scripts
#261
samfux84
closed
3 years ago
1
Transgene Alignment
#260
bwfait
closed
3 years ago
5
BUG: zUMIs from demuxed files fails during SAMtools
#259
niherndon
closed
3 years ago
8
Analysis of the results generated by zUMIs
#258
HealHer
closed
3 years ago
3
Using for cite-seq
#257
curtisd0886
closed
3 years ago
1
Customize find_pattern
#256
vincenthahaut
closed
3 years ago
1
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