issues
search
sdparekh
/
zUMIs
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
GNU General Public License v3.0
268
stars
67
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Demultiplex option in YAML config Rshiny application
#346
Ni-Ar
closed
1 year ago
2
samtools sort: couldn't allocate memory for bam_mem
#345
royfrancis
closed
1 year ago
6
some warning report and question about barcodes
#344
hulilalia
closed
1 year ago
6
More info about the conda env and docker image
#343
royfrancis
closed
1 year ago
2
Does zUMIs remove PCR duplicates from the bam files?
#342
pschinke
closed
1 year ago
7
sjdbOverhang Error when trying to run zUMIs
#341
stkgo
closed
1 year ago
5
Using singularity images as executable
#340
royfrancis
closed
1 year ago
4
STAR version error
#339
royfrancis
closed
1 year ago
1
Unable to run zUMIs - SmartSeq3xpress
#338
KoenDeserranno
closed
1 year ago
5
Error with yaml file
#337
MartaBenegas
closed
1 year ago
3
samtools view: error closing standard output: -1
#336
Liripo
closed
1 year ago
2
zUMIs-env no longer in download from GitHub
#335
katharinebca
closed
1 year ago
3
samtools empty query name
#334
brainfo
closed
1 year ago
1
Error in uik(bccount$cellindex, bccount$cs/1000) : Method is not applicable for such a small vector. Please give at least a 5 numbers vector
#333
carmensandoval
closed
1 year ago
3
BUG: conda activate, conda-unpack, RScript not found.
#332
carmensandoval
closed
1 year ago
2
wrong version check
#331
brainfo
closed
1 year ago
2
zUMIs.YAML.error.log: All files "NULL"
#330
carmensandoval
closed
1 year ago
9
expected_barcodes file with dual indices
#329
carmensandoval
closed
1 year ago
2
I want to count how many alignments fall into exonic, intronic and intergenic regions.
#328
pandh0607
closed
1 year ago
3
Error in dyn.load(file, DLLpath = DLLpath, ...) :
#327
brain-discourse
opened
1 year ago
0
Invalid size argument during downsampling
#326
ScottNortonPhD
closed
1 year ago
1
BUG: unable to run zUMI's
#325
LJK1991
closed
1 year ago
4
Rerun from mapping step using filtered.tagged.unmapped.bam?
#324
Anacristina0914
closed
2 years ago
5
Extract UMI-containing reads from bam files
#323
MengjunWu
closed
1 year ago
4
FeatureCount output
#322
Shinichiro03
closed
2 years ago
6
R library cannot detect
#321
lingnanyuan
closed
1 year ago
7
Error in alldt[[i]][[2]] : subscript out of bounds Calls: bindList
#320
parichitran
closed
2 years ago
1
zUMI counts multi-mappers, is there an option to only allow uniquely mapped reads counted?
#319
MengjunWu
closed
2 years ago
4
Total alignments : 0
#318
Chuang1118
closed
2 years ago
3
Low exon or intron+exon counts and genes in STARsolo compared to counts and genes found in zUMIs
#317
EmeTexe
closed
1 year ago
1
Error in mclapply
#316
mehdipourrostami
closed
1 year ago
7
Met Execution problems during running the example data.
#315
RFLiu2021
closed
2 years ago
4
EXITING because of fatal error: buffer size for SJ output is too small Solution: increase input parameter --limitOutSJcollapsed
#314
parichitran
closed
2 years ago
0
Encountering unpaired read upon analyzing SmartSeq2 dataset in NCBI SRA
#313
kbattenb
closed
2 years ago
4
pigz: skipping: /media/Project1/00_Fastq/finaltest/MergedRead_2.fastq.gz: corrupted -- invalid deflate data (invalid block type) pigz: abort: internal threads error
#312
parichitran
closed
2 years ago
3
zUMIs "inex" all read counts and downsampled read counts the same
#311
seifudd
closed
2 years ago
4
ERROR! Fastq files are not in the same order. Make sure to provide reads in the same order
#310
parichitran
closed
2 years ago
7
tag a release
#309
notestaff
closed
2 years ago
1
"43 barcodes detected" in test data"
#308
parichitran
closed
2 years ago
1
BUG: stuck at 'Descriptive statistics...'
#307
pchiang5
closed
2 years ago
1
Getting error after the mapping step
#306
luckysardar
closed
2 years ago
4
Barcodes present in BCstats.txt, but not in final result.
#305
diyang1354
closed
2 years ago
1
Error in loadNamespace(x)
#304
xiaoyuppp
closed
2 years ago
1
How can I get mapping rate for each cell?
#303
diyang1354
closed
2 years ago
1
Question related to feature names of gene expression matrix.
#302
diyang1354
closed
2 years ago
1
yaml multimappers options
#301
mlizio
closed
2 years ago
1
how to use the UMI information of intron.exon
#300
zjwang6
closed
2 years ago
1
how to use the UMI information of intron.exon
#299
zjwang6
closed
2 years ago
2
Question: Does zUMIs perform any frameshift correction for SPLiT-seq?
#298
jeremymsimon
closed
2 years ago
2
Problems encountered in Smartseq3 data processing
#297
zmf0621
closed
2 years ago
10
Previous
Next