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selkamand
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sigstash
Easily load published mutational signatures into R
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Add cancer type to sig_load_annotations for cosmic samples
#61
selkamand
opened
15 hours ago
0
CodeCov Badge not updating
#60
selkamand
opened
1 month ago
0
fix: dropped unnecessary cols from refsigs
#59
selkamand
closed
1 month ago
0
Refsig collections have unnecessary 'signature' column
#58
selkamand
closed
1 month ago
0
feat: added sigclasses and tests for channel2tupe
#57
selkamand
closed
1 month ago
0
Annotate sigclass of each dataset
#56
selkamand
closed
1 month ago
1
Fix sig_convert_channel2type for SV32 class
#55
selkamand
closed
1 month ago
1
49 Miscellaneous non-breaking updates
#54
selkamand
closed
2 months ago
0
Consider adding attribute embedding in sig_read_signatures()
#53
selkamand
closed
2 months ago
0
47 add collection name attribute to dataframe
#52
selkamand
closed
2 months ago
0
Consider dropping hash-based identification
#51
selkamand
opened
2 months ago
1
Parallel Unit Testing
#50
selkamand
closed
2 months ago
1
Badges
#49
selkamand
closed
2 months ago
0
fix: added recompute of md5sums before test
#48
selkamand
closed
2 months ago
0
Add collection name attribute to dataframe
#47
selkamand
closed
2 months ago
1
45 sv signature types should be more specific
#46
selkamand
closed
2 months ago
0
SV signature 'types' should be more specific
#45
selkamand
closed
2 months ago
0
Large-scale analysis of whole genome sequencing data from formalin-fixed paraffin-embedded cancer specimens demonstrates preservation of clinical utility
#44
selkamand
opened
2 months ago
0
Still appears to be some locale dependence of
#43
selkamand
closed
2 months ago
2
40 add a unique code linked directly to the matrix itself sigminer and cosmic versions
#42
selkamand
closed
2 months ago
0
inconsistent behaviour across locales
#41
selkamand
closed
2 months ago
2
Add a unique code linked directly to the matrix itself (sigminer and cosmic versions)
#40
selkamand
closed
2 months ago
1
38 add readwrite functionality for signature collections
#39
selkamand
closed
3 months ago
0
Add read/write functionality for signature collections
#38
selkamand
closed
3 months ago
0
refactor: added reformat functions to switch from list-style sig coll…
#37
selkamand
closed
3 months ago
0
35 add refsig doublet signatures from degasperi et al 2022
#36
selkamand
closed
3 months ago
0
Add refsig doublet signatures from Degasperi et al. 2022
#35
selkamand
closed
3 months ago
1
feat: added signal refseq SBS signatures based on 2022 paper
#34
selkamand
closed
3 months ago
0
Add Signal Cancer Reference Signatures (v2.03)
#33
selkamand
closed
3 months ago
1
fix: fixed broken sigstash to sigminer indel conversion
#32
selkamand
closed
4 months ago
0
Fix format = sigminer loading of sigstash tables
#31
selkamand
closed
4 months ago
2
29 sigstash sigminer to cosmic indel conversion should turn to not the other way around
#30
selkamand
closed
4 months ago
0
sigstash sigminer to cosmic indel conversion should turn '_' To ':' not the other way around
#29
selkamand
closed
4 months ago
2
27 increase types of channels supported by convert channel2type
#28
selkamand
closed
4 months ago
0
Increase types of channels supported by :convert_channel2type
#27
selkamand
closed
4 months ago
1
23 sig convert channel2type should have user supplied default when a class is unsupported
#26
selkamand
closed
4 months ago
0
Add a way to get valid cosmic channels and types expected for each sigtype
#25
selkamand
closed
4 months ago
0
support SBS1536 sig_convert_channel2type
#24
selkamand
closed
4 months ago
0
sig_convert_channel2type should have user-supplied default when a class is unsupported
#23
selkamand
closed
4 months ago
1
add sig_collection_to_tidy() and make sig_load use those functions instead of duplicating code
#22
selkamand
closed
3 months ago
0
fix: added sig_merge and sig_subset to simplify creation of custom da…
#21
selkamand
closed
5 months ago
0
easier creation of custom signature datasets
#20
selkamand
closed
5 months ago
2
fix: updated github actions
#19
selkamand
closed
5 months ago
0
add basic CI
#18
selkamand
closed
5 months ago
0
fix: exported sigminer to cosmic channel name conversions + renamed c…
#17
selkamand
closed
5 months ago
0
Fix channel2type name
#16
selkamand
closed
5 months ago
0
SV signatures channels have '_' instead of ':' (required by sigminer) as separator
#15
selkamand
closed
5 months ago
0
bgzip signature data
#14
selkamand
closed
2 months ago
2
12 add cosmic experimental signature v1
#13
selkamand
closed
6 months ago
0
Add cosmic experimental signature V1
#12
selkamand
closed
6 months ago
0
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