sg-s xolotl issues - Githubissues

sg-s / xolotl

A MATLAB neuron simulator. Very fast (written in C++). Flexible (fully object oriented). Immediate (live manipulation in MATLAB). Comes with a powerful parameter optimizer. Get started ➡️

https://go.brandeis.edu/xolotl

GNU General Public License v3.0

45 stars 8 forks source link

issues

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xolotl won't run on M3 Mac

#591 smbaca closed 5 months ago
8
added new course

#590 sg-s closed 1 year ago
0
add new course info

#589 sg-s closed 1 year ago
0
xolotl x.fit issue

#588 smbaca closed 2 years ago
2
xolotl needs a new release

#587 sg-s closed 1 year ago
0
testConductances not working on Windows 10 machine

#586 smbaca closed 2 years ago
23
i can't test xolotl without the global optimization toolbox

#585 sg-s opened 2 years ago
1
documentation may lead to accidentally include .git folders in their path, causing chaos

#584 smbaca opened 2 years ago
24
demo page on docs shows colors in plot, which is not produced because defaults are changed

#583 smbaca closed 2 years ago
1
AlphaSynapse is broken (at least in some version)

#582 smbaca closed 2 years ago
5
there should exist infrastructure to pass vectors of data to compartments

#581 sg-s opened 2 years ago
0
add rectifying electrical synapse

#580 sg-s closed 2 years ago
0
Implementing dynamic clamp / real-time simulation

#579 JRS92 closed 2 years ago
2
Struggling with inhibitory synapses

#578 AlexSonneborn closed 3 years ago
11
New C++11 features may allow us to do away with much of the type heirarchy

#577 sg-s opened 3 years ago
5
Trouble building C++ code from matlab

#576 alec-hoyland closed 3 years ago
5
Can we re-architecture the entire thing to cut out cpplab?

#575 sg-s opened 3 years ago
1
merge neuron-db into this

#574 sg-s opened 3 years ago
1
Added currentscapes for multicompartment models

#573 eomorozova closed 3 years ago
2
xolotl.uninstall doesn't work when installed with a toolbox

#572 sg-s closed 3 years ago
0
Added Slow Ca current

#571 eomorozova closed 3 years ago
0
Is it possible to build a model without recompiling everything?

#570 sg-s opened 3 years ago
0
synapse activation functions binaries being stored in the wrong place

#569 sg-s closed 3 years ago
0
are there a whole bunch of useless includes?

#568 sg-s closed 3 years ago
1
synapses do not implement getCurrent methods

#567 sg-s closed 3 years ago
0
All currents should be reported in the same units (nA)

#566 sg-s opened 3 years ago
0
Automated testing framework proposal

#565 sg-s opened 3 years ago
0
Copying a cell with synapses leads to unexpected behaviour

#564 sg-s closed 3 years ago
0
x.upload should not use hard coded paths to gh

#563 sg-s closed 3 years ago
0
Automated uploading of binaries (at least on macOS + GNU/linux)

#562 sg-s opened 3 years ago
0
write a new upload() method to easily upload binaries to the binary server on github

#561 sg-s closed 3 years ago
0
prinz/Cholinergic appears to always be use approximations.

#560 sg-s opened 3 years ago
0
x.show('prinz/Cholinergic') is totally broken

#559 sg-s closed 3 years ago
0
"See also" links broken in docs

#558 sg-s closed 3 years ago
0
Better output readout for complex mechanisms

#557 sg-s opened 3 years ago
0
Introduce a ion mechanism

#556 sg-s opened 3 years ago
0
clamping currents computed using Ohm's Law, and do not respect custom getCurrent methods

#555 JRS92 closed 3 years ago
8
need a way to call virtual functions in base classes (e.g. mechanism) from classes that derive from it

#554 sg-s closed 3 years ago
0
switch to connect-by-default architecture for mechanisms

#553 sg-s closed 3 years ago
0
conductance2.hpp -> additional_methods.hpp

#552 sg-s closed 3 years ago
1
Need a generalized scratch-in/out system to hndle synchronous computation of differnet mechanisms

#551 sg-s closed 3 years ago
1
package does not include List (which also conflicts with a builtin) and causes object display to fail

#550 peterle041963 closed 3 years ago
3
Missing binaries for examples

#549 neurologic closed 3 years ago
2
xolotl no longer works with the new puppeteer

#548 sg-s closed 3 years ago
0
No getfullstatesize

#547 sg-s closed 3 years ago
0
why is getFullStateSize a function? Why is getClass a function?

#546 sg-s closed 3 years ago
1
Overhaul virtual functions in abstract classes to remove a bunch of boilerplate code from mechanisms

#545 sg-s closed 3 years ago
4
Documentation should talk about how to plot activation, inactivation variables over time (ChannelProbe)

#544 JRS92 closed 3 years ago
14
There is almost certainly a memory leak somewhere

#543 sg-s opened 4 years ago
0
Defining integration method for conductance

#541 JRS92 closed 4 years ago
8