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shawnlaffan
/
biodiverse
A tool for the spatial analysis of diversity
http://shawnlaffan.github.io/biodiverse/
GNU General Public License v3.0
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GUI: plot z-scores using divergent colour scheme
#841
shawnlaffan
closed
1 year ago
0
CI: Update perl to 5.36 on linux
#840
shawnlaffan
closed
1 year ago
0
Tree imports: Try most likely import method first
#839
shawnlaffan
closed
1 year ago
0
cleanup files, rename test files to kebab case
#838
shawnlaffan
closed
1 year ago
0
Post v4
#837
shawnlaffan
closed
1 year ago
0
GUI: Improve warning message when no shapes overlap the plot area
#835
shawnlaffan
closed
1 year ago
0
Indices and randomisations: allow re-use of invariant results between analyses
#834
shawnlaffan
opened
1 year ago
1
GUI spatial tab: allow branch colouring using results from other outputs
#833
shawnlaffan
opened
1 year ago
0
Speed improvements for PE, RPE etc
#831
shawnlaffan
closed
1 year ago
0
Use more caching in the modified independent swaps code
#830
shawnlaffan
closed
1 year ago
0
randomisations: cache modified independent swaps setup
#829
shawnlaffan
closed
1 year ago
1
clean up example scripts
#828
shawnlaffan
opened
1 year ago
0
Issue 819 canape tests
#827
shawnlaffan
closed
1 year ago
0
Update example_PD.pl
#826
Otoliths
closed
1 year ago
1
Update example_PD.pl
#825
Otoliths
closed
1 year ago
1
How to run example_PD.pl code parallelly?
#824
Otoliths
closed
1 year ago
2
Wiki: set background for equations to white
#823
shawnlaffan
closed
1 year ago
0
randomisations: implement curveball algorithm
#822
shawnlaffan
opened
1 year ago
0
Canape mk2
#821
shawnlaffan
closed
1 year ago
0
GUI: add divergent colour scheme
#820
shawnlaffan
opened
1 year ago
1
Add CANAPE
#819
shawnlaffan
closed
1 year ago
2
GUI spatial tab - add option to highlight only labels in hovered group on dendrogram
#818
shawnlaffan
closed
7 months ago
1
GUI Spatial tab - dendrogram turnover highlighting incorrect when neighour highlights are off
#817
shawnlaffan
closed
2 years ago
0
Exception thrown when runnning relative phylogenetic calculations after importing tree and remapping node names
#816
shawnlaffan
closed
2 years ago
0
indices - update metadata for RPD1 and RPE1 to mark them as not recommended
#815
shawnlaffan
closed
2 years ago
1
Tree trimming - add default option to merge single child branches with their child
#814
shawnlaffan
closed
1 year ago
1
Indices: element property calcs should only be run when the basedata has said properties
#812
shawnlaffan
closed
2 years ago
0
Indices - add MPD and MNTD variance
#811
shawnlaffan
closed
2 years ago
1
Tree imports - probe file/data for likely type
#809
shawnlaffan
closed
1 year ago
0
tree imports: handle R phylo format
#808
shawnlaffan
closed
2 years ago
1
BaseData: new_with_reordered_element_axes does not update cell sizes
#807
shawnlaffan
closed
2 years ago
1
GUI: view labels - show meaningful error when no spatial data loaded
#806
shawnlaffan
closed
2 years ago
1
raster imports: Use a def query to constrain imports
#805
shawnlaffan
opened
2 years ago
1
refactor TreeNode::group_nodes_below
#804
shawnlaffan
opened
2 years ago
1
spatial conditions - allow access to tree outputs
#803
shawnlaffan
closed
2 years ago
1
GUI - Spatial tab not cleaning up tree properly
#802
shawnlaffan
closed
2 years ago
0
GUI - import matrix format from spreadsheet fails
#801
shawnlaffan
closed
2 years ago
0
Tree exported in newick format is missing trailing semicolon
#800
joelnitta
closed
2 years ago
1
Release 4 checklist
#799
shawnlaffan
closed
1 year ago
1
Replace Biodiverse::Statistics with Statistics::Descriptive::PDL
#798
shawnlaffan
closed
2 years ago
1
Trees - calculate mean nearest taxon distance for full set of terminals
#797
shawnlaffan
closed
2 years ago
1
CANAPE analysis: Can't use string ("#NEXUS") as a HASH ref - error
#796
gaiteiro
closed
3 years ago
9
external gdal and proj installations interfere with exe on Windows
#795
shawnlaffan
closed
2 years ago
2
NRI and NTI: linearise calculation of expected values
#794
shawnlaffan
closed
3 years ago
1
NRI/NTI: refactor bnok ratio calcs
#793
shawnlaffan
closed
3 years ago
1
average relative phylogenetic endemism across 1000 trees
#792
mariaguerrina
opened
3 years ago
2
Indices - implement exact NTI expected values for ultrametric trees
#790
shawnlaffan
closed
3 years ago
1
Indices - implement exact NRI expectations
#789
shawnlaffan
closed
3 years ago
1
Spatial outputs - comment-only second spatial condition interferes with optimisations
#788
shawnlaffan
closed
3 years ago
0
Publish on CPAN?
#787
mohawk2
opened
3 years ago
5
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