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shendurelab
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MIPGEN
One stop MIP design and analysis
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failure flag messy code
#56
mynamezyl
opened
2 weeks ago
0
Ext_Probe_copy & lig_probe_copy
#55
Kapilavasthi6
opened
2 months ago
2
Long inserts
#54
Malabady
closed
4 months ago
3
Can MIPgen be used in mip design of aquatic animals?
#53
Cockle01
closed
4 months ago
6
What is the reason for a difference in arm length between ligation and extension arms?
#52
RoyBSimons
closed
4 months ago
1
Can MIP be applied to RNA-Seq? Has anyone done it, I can't catch cDNA。
#51
zpc975571872
closed
4 months ago
2
Relaxing the "capture_size" parameters results in a worse design
#50
francois-lecoquierre
closed
1 year ago
7
The final step of the analysis did not respond, no error message was displayed, and only an empty file was generated.
#49
zpc975571872
closed
1 year ago
2
VCF file not being loaded
#48
simonzeilmann
closed
4 months ago
2
Picked_mips depend on the set of positions
#47
Skorn33
closed
1 year ago
4
Can the MIP backbone sequence be replaced?
#46
zpc975571872
closed
1 year ago
3
Selecting Multiple MIPs per Site
#45
RaviKBajpai
closed
1 year ago
3
Alignment of MIPs among each other
#44
juliac224
closed
1 year ago
1
Interested in a specific mutation but all smMIPs covering the region come up with low logistic scores
#43
biokatrin
closed
1 year ago
1
No logistic scores, only -nan
#42
biokatrin
closed
1 year ago
3
mipgen_smmip_collapser.py generating SAM with empty CIGAR
#41
kzkedzierska
closed
5 years ago
0
generate_ucsc_track IndexError: list index out of range
#40
LorettaM
closed
1 month ago
3
Unable to run the practice file
#39
victor-Nanjing
closed
5 years ago
0
Reads have rejected SAM flags
#38
sinhaeti
opened
5 years ago
3
-trf TRF directory invalid
#37
MeganQiu
closed
1 year ago
4
mipgen_pipeline_builder input files
#36
sinhaeti
closed
6 years ago
2
all_MIPs > collapsed_MIPs > picked_MIPs
#35
ghost
closed
1 year ago
4
Failure Flag 1
#34
ghost
closed
1 year ago
2
Versions of BWA and Samtools required for MIPgen
#33
tobsecret
closed
6 years ago
4
Documentation
#32
tobsecret
closed
6 years ago
1
Is it possible to run Mipgen on a different organism (fasta)?
#31
Flope
closed
1 year ago
4
Unable to reproduce results from older version.
#30
LaurensHannes
closed
1 year ago
3
using known isoform and oligos
#29
JulieHachey
closed
1 year ago
3
Correct 'snow' colour
#28
DNAbased
opened
7 years ago
0
Inconsistent results using the mipgen_smmip_collapser.py
#27
DNAbased
closed
7 years ago
2
no masked feature file found
#26
JulieHachey
closed
1 year ago
1
All logistic scores nan
#25
nvanzuy
closed
1 year ago
3
ImportError: genome_sam_collapser.so: undefined symbol: PyUnicodeUCS2_DecodeUTF8
#24
meganamsu
closed
1 year ago
3
empty SEQ fields in collapsed.sam reads
#23
C4t3
opened
7 years ago
3
collapsing has terminated
#22
LINLIUNIG
closed
1 year ago
1
Dense MIP coverage of region
#21
rdoan
closed
1 year ago
1
Using_more_than_1_snpfile
#20
ECarbo
closed
1 year ago
3
removing lig-extension arms
#19
neurogene
closed
1 year ago
3
BWA file
#18
YuliaGo
closed
1 year ago
4
mipgen_pipeline_builder
#17
rdoan
closed
1 year ago
5
5' Phosphorylation of the probes
#16
LINLIUNIG
closed
1 year ago
6
MIP probe design strand issue, SNP in the probe and probe synthesis
#15
LINLIUNIG
closed
1 year ago
4
PCR amplification of MIPs oligos
#14
rdoan
closed
1 year ago
3
Gaps in covering supplied regions
#13
kaitlinleanne
closed
1 year ago
3
RE Digest
#12
rdoan
closed
1 year ago
4
too few picked mips ?
#11
zd1
closed
1 year ago
8
SNPs not read for hg19
#10
geertvandeweyer
closed
4 months ago
4
Segmentation fault error when using SVR or MIXED scoring
#9
Flope
closed
1 year ago
4
Tiling errors in long contiguous regions
#8
augustboyle
closed
1 year ago
0
SNP MIPs in indel regions
#7
augustboyle
closed
1 year ago
0
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