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shishenyxx
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DeepMosaic
DeepMosaic is a deep-learning-based mosaic single nucleotide classification tool without the need of matched control information.
https://www.nature.com/articles/s41587-022-01559-w
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Update README.md
#38
shishenyxx
closed
3 weeks ago
0
NAs in the predictions
#37
msherafatian
opened
3 weeks ago
1
Docker image?
#36
BenpengMiao
opened
1 month ago
1
Condition for "extra_mosaic_filters"
#35
duct317
closed
3 months ago
2
Effect of adapters on the final calling
#34
ChenAugustin
opened
5 months ago
3
too many PASS for 30X WGS
#33
huangyuanf
closed
1 month ago
1
Update README.md
#32
shishenyxx
closed
6 months ago
0
Indel predictions
#31
RP-Bioinfo
closed
8 months ago
1
Too many mutect2 variants
#30
gevro
closed
6 months ago
10
How to run DeepMosaic with nanopore WGS data?
#29
ymcki
closed
8 months ago
3
Large number of output files
#28
gevro
closed
9 months ago
3
homopolymer and dinucluotide filter
#27
huangyuanf
closed
9 months ago
1
Code refactoring
#26
tosemml
opened
10 months ago
1
Very high number of mosaic predictions
#25
gevro
closed
10 months ago
8
Multi-threaded support
#24
gevro
closed
10 months ago
2
Run errors
#23
gevro
closed
10 months ago
2
Error in downloading new 1.1.1 singularity container
#22
gevro
closed
10 months ago
2
deepmosaic-draw: error: unrecognized arguments: -db gnomad_genome
#21
gevro
closed
10 months ago
7
CRAM input
#20
gevro
opened
10 months ago
1
Using DeepMosaic for diploid plants
#19
H-wong017
closed
6 months ago
6
Developement
#18
arzoopatel5
closed
11 months ago
0
different gnomad databases?
#17
apaul7
closed
11 months ago
1
Developement
#16
arzoopatel5
closed
1 year ago
0
torch
#15
qwertyuichi
closed
1 year ago
1
v1.0.2 update
#14
arzoopatel5
closed
1 year ago
0
A little issue in canvasPainter.py
#13
Lidweixiang
closed
1 year ago
1
How DeepMosaic use population information in training
#12
hiyoothere
closed
1 year ago
1
Errors at multiprocessing and matplotlib
#11
hyunyong-koh
closed
1 year ago
3
Questions about sample.vcf in step1
#10
WZo0o
closed
1 year ago
6
high maf and score3 simultaneously?
#9
kunalkathuria
closed
1 year ago
2
speed up step 1?
#8
kunalkathuria
closed
1 year ago
2
If input VCFs are splitted by chromosomes, should input BAM files also be splitted by chromosomes too?
#7
ehojune
closed
1 year ago
1
mac?
#6
proukakis
closed
1 year ago
2
DeepMosaic performance at 30x depth?
#5
changhan1110
closed
1 year ago
4
running DeepMosaic with hg38
#4
tgambin
closed
1 year ago
3
About SimData
#3
songbowang125
closed
1 year ago
5
Recommendations for calling candidate variants
#2
wdecoster
closed
3 years ago
8
How does DeepMosaic perform on PCR-amplified WES data?
#1
sattarkh
closed
2 years ago
7