issues
search
sigven
/
cpsr
Cancer Predisposition Sequencing Reporter (CPSR)
https://sigven.github.io/cpsr/
Other
56
stars
12
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Use system cp command
#62
pdiakumis
closed
1 month ago
0
incorrect permissions when copying templates dir with file.copy()
#61
MareikeJaniak
closed
1 month ago
9
Quarto fails during rendering of HTML
#60
MareikeJaniak
closed
1 month ago
8
Documentation fixes
#59
pdiakumis
closed
2 months ago
0
Use local favicon and remove system calls
#58
pdiakumis
closed
2 months ago
0
Fix dependencies
#57
pdiakumis
closed
2 months ago
0
openxlsx2: install from conda
#56
pdiakumis
closed
3 months ago
0
Bump r-base to 4.3.3
#55
pdiakumis
closed
3 months ago
0
Conda dependencies
#54
pdiakumis
closed
3 months ago
1
Feature Request - support CNV calls (and ideally SV calls)
#53
adbeggs
opened
4 months ago
5
v2.0rc - 2024
#52
sigven
closed
2 months ago
0
adding clones IDs + child clone emerging outside parent clone
#51
LayalYasin
closed
8 months ago
2
Biomarker variants not in Pathogenic/Likely Pathogenic section of report
#50
AidanGCr
opened
8 months ago
1
Update conda R version
#49
pdiakumis
closed
8 months ago
0
Add sif file for running on an HPC
#48
AidanGCr
closed
11 months ago
1
Use `styler` for consistent Rmd/R file styling
#47
pdiakumis
closed
1 year ago
0
added logo
#46
sigven
closed
1 year ago
0
Installation Instructions Only Describe Conda
#45
DarioS
closed
1 year ago
2
Encounter the error in cpsr-report-generation()
#44
A-Tsai
closed
2 years ago
3
1.0.0 release
#43
sigven
closed
2 years ago
0
GitHub Actions: create tag
#42
pdiakumis
closed
2 years ago
0
Documentation cleanup
#41
pdiakumis
closed
2 years ago
0
Various fixes
#40
pdiakumis
closed
2 years ago
0
R package setup
#39
pdiakumis
closed
2 years ago
2
make infromation like ckb to cpsr
#38
asmlgkj
closed
2 years ago
4
ACMG guideline updated to version 3.0. New genes were added to the secondary finding gene list.
#37
jxshi
closed
3 years ago
2
Not able to download the data bundles (404 Error)
#36
ashishjain1988
closed
3 years ago
2
genes being excluded from CPSR exploratory track
#35
MrsLaviniaG
closed
3 years ago
5
Error: `x` and `y` must share the same src
#34
brucemoran
closed
3 years ago
5
minor typo in src/cpsr_functions.R
#33
tinavisnovska
closed
3 years ago
1
ImportError: No module named toml
#32
hmalcaraz
closed
3 years ago
1
Pin to new PCGR
#31
vladsavelyev
closed
3 years ago
0
x object 'GWAS_CITATION' not found
#30
brucemoran
closed
3 years ago
3
Error in loadNamespace(name) : there is no package called 'reactable'
#29
brucemoran
closed
3 years ago
2
Error: Problem with `mutate()` input `ACMG_PVS1_1`.
#28
jxshi
closed
3 years ago
4
cpsr_configuration_default.toml missing from PCGR data
#27
brucemoran
closed
4 years ago
2
Missed variant due to transcript pick?
#26
vladsavelyev
closed
4 years ago
9
Travis, conda, and --debug updates
#25
vladsavelyev
closed
4 years ago
0
cpsr_validate_input.py: error: argument vcf_validation: invalid int value: '/home/zdjzyx01/biosoft/cpsr/cpsr.toml'
#24
jxshi
closed
4 years ago
11
ERROR while running
#23
kokyriakidis
closed
4 years ago
3
Custom panel
#22
ridwan-shaikh
closed
3 years ago
11
Failed to instantiate plug in LoF
#21
ridwan-shaikh
closed
4 years ago
3
Trio Analysis
#20
kokyriakidis
closed
4 years ago
1
Unused arguments in crosstalk::filter_slider
#19
ridwan-shaikh
closed
4 years ago
16
Double comma in line 24 of cpsr_validate_input.py
#18
ridwan-shaikh
closed
4 years ago
2
Missing gnomad_cpsr.vcf.gz
#17
vladsavelyev
closed
4 years ago
3
CPSR gnomAD maf cut-off
#16
vladsavelyev
closed
4 years ago
3
Variant missed in GRCh38
#15
vladsavelyev
closed
4 years ago
7
Conda: add dependencies and pin PCGR
#14
vladsavelyev
closed
5 years ago
0
Option of not specifying tumor type
#13
vladsavelyev
closed
5 years ago
0
Next