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sii-companion
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companion
A genome annotation tool for more than just protists
https://companion.ac.uk/
ISC License
6
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Fix distribution gff errors
#55
haessar
closed
3 weeks ago
1
Issue with BRAKER for local installation
#54
PeterMBlack
opened
6 months ago
0
Upgrade BRAKER to remove GM_KEY req
#53
haessar
closed
7 months ago
0
Companion web maxicircle annotation
#52
ecp52
opened
7 months ago
0
Process `predict_ncRNA (1)` terminated with an error exit status (139)
#51
anearman
opened
8 months ago
1
/usr/bin/env: ‘gt’: No such file or directory
#50
anearman
closed
8 months ago
2
install gt 1.6.3 from source
#49
haessar
closed
9 months ago
0
Catch/ignore job breaking exception during gene splitting
#48
haessar
closed
9 months ago
0
v2.2.0
#47
haessar
closed
11 months ago
0
add conditional overlap logic to pseudogene_calling process
#46
haessar
closed
11 months ago
0
add nof_annotated_regions stat
#45
haessar
closed
1 year ago
0
Fix integration bugs
#44
haessar
closed
1 year ago
0
Gene filtering fixes
#43
haessar
closed
1 year ago
0
custom ncRNA models for Infernal
#42
haessar
closed
1 year ago
0
Minor updates
#41
haessar
closed
1 year ago
0
Make BRAKER parsing more robust
#40
haessar
closed
1 year ago
1
Updated RATT entry point
#39
haessar
closed
1 year ago
0
Prevent genometools Assertion Error when calling remove_leaf
#38
haessar
closed
1 year ago
2
CI/CD for Companion
#37
haessar
closed
1 year ago
0
Feature braker3
#36
haessar
closed
1 year ago
0
Hotfix bypass common failures
#35
haessar
closed
1 year ago
0
Coordinates of Pfam domains are not correctly reported due to splicing
#34
dariober
opened
1 year ago
0
Feature improve braker training
#33
haessar
closed
1 year ago
0
Feature orthomcl2
#32
haessar
closed
2 years ago
0
braker.pl: command not found
#31
JuFengWang
closed
2 years ago
7
Feature braker
#30
haessar
closed
2 years ago
0
swap blast_for_circos with nucmer_for_circos
#29
haessar
closed
2 years ago
0
Added run_liftoff process to pipeline, and added dependencies to Dock…
#28
haessar
closed
2 years ago
1
Updated ABACAS2
#27
josruirod
closed
1 year ago
0
Feature working docker
#26
haessar
closed
3 years ago
0
Remove all circos links of length < 5000 to ensure visual isn't too crowded
#25
haessar
closed
3 years ago
0
committing a change that was unstaged on servers: improves robustness…
#24
haessar
closed
3 years ago
0
COM-6: Committing working loc_web.config for first time, containing SNAP pat…
#23
haessar
closed
3 years ago
0
Added changelog
#11
ghost
closed
2 years ago
0
missing main.nf
#10
ghost
closed
1 year ago
0
No such file or directory for .fasta (when using Singularity)
#9
ghost
opened
3 years ago
0
docker problems
#8
ghost
closed
1 year ago
0
First attempt to run test job fails
#7
ghost
closed
1 year ago
0
Extremely long runtime due to OrthoMCL
#6
ghost
closed
1 year ago
1
How to generate the file ".../example-data/references/_all/all_orthomcl.out"
#5
ghost
closed
2 years ago
0
can'r run tutorial's example "nextflow run script7.nf -with-singularity nextflow/rnaseq-nf"
#4
ghost
closed
2 years ago
0
missing pseudochr.fasta.gz for Leishmania in Public server (is Companion still supported)
#3
ghost
closed
2 years ago
0
GTF file not correct format or does not contain any exon feature
#2
ghost
closed
1 year ago
0
SNAP error
#1
ghost
closed
1 year ago
1