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simularium
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simulariumio
Python package that converts simulation outputs to the format consumed by the Simularium viewer website
Apache License 2.0
5
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3
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use python 3.10 instead of 3.8 for main build
#190
ascibisz
closed
2 months ago
0
CI Build Broken for Python 3.8
#189
ascibisz
closed
2 months ago
0
Make centering cytosim fibers optional
#188
blairlyons
opened
3 months ago
0
ci(dependabot): bump actions/add-to-project from 1.0.1 to 1.0.2
#187
dependabot[bot]
closed
2 months ago
2
ci(dependabot): bump actions/add-to-project from 1.0.0 to 1.0.1
#186
dependabot[bot]
closed
5 months ago
0
Fix/use display names
#184
blairlyons
closed
6 months ago
0
Feature/draw md bonds
#183
advaitathreya
closed
5 months ago
7
Version compatibility conflict with cellpack and simularium (local development)
#182
advaitathreya
opened
6 months ago
0
Pin cellpack version to 1.0.3
#181
mogres
closed
6 months ago
0
Include option to draw bonds from MD trajectory
#180
advaitathreya
closed
6 months ago
3
ci(dependabot): bump actions/add-to-project from 0.5.0 to 1.0.0
#179
dependabot[bot]
closed
6 months ago
1
WIP: NERDSS Converter
#178
ascibisz
opened
7 months ago
0
ci(dependabot): bump actions/setup-python from 4 to 5
#177
dependabot[bot]
closed
6 months ago
1
ci(dependabot): bump actions/add-to-project from 0.5.0 to 0.6.0
#176
dependabot[bot]
closed
6 months ago
2
ci(dependabot): bump extractions/setup-just from 1 to 2
#175
dependabot[bot]
closed
6 months ago
1
ci(dependabot): bump codecov/codecov-action from 3 to 4
#174
dependabot[bot]
closed
6 months ago
0
Maya plugin
#173
blairlyons
opened
8 months ago
0
Convert aLens
#172
blairlyons
opened
8 months ago
0
update smoldyn autoconversion templates to match design spec
#170
ascibisz
closed
8 months ago
1
subpoints relative to agent position
#169
ascibisz
closed
8 months ago
3
Convert lattice microbes data
#167
blairlyons
closed
8 months ago
1
Convert NERDSS data
#165
blairlyons
opened
8 months ago
0
Convert VMD data
#168
blairlyons
closed
8 months ago
0
Convert MEM3DG models
#166
blairlyons
opened
8 months ago
0
Update README.md
#164
meganrm
closed
10 months ago
0
Update file_format.md
#163
meganrm
closed
10 months ago
2
ci(dependabot): bump conda-incubator/setup-miniconda from 2 to 3
#162
dependabot[bot]
closed
8 months ago
1
Help with MCell
#161
corredD
opened
11 months ago
0
TrajectoryFileInfo only declares/allows a PerspectiveCameraSpec
#185
toloudis
opened
11 months ago
1
move things we need in octopus to top level simulariumio package
#160
ascibisz
closed
11 months ago
1
ci(dependabot): bump actions/checkout from 3 to 4
#159
dependabot[bot]
closed
8 months ago
1
Add update functions to TrajectoryData
#158
ascibisz
closed
1 year ago
0
Add New Data Types for Simularium Frame Data
#157
ascibisz
closed
12 months ago
1
Documentation on how to make children(ie states)
#156
meganrm
opened
1 year ago
0
Append multiple agents to TrajectoryData objects
#155
mogres
closed
1 year ago
6
Fix/update examples
#154
ascibisz
closed
1 year ago
4
Issues with appending agents to TrajectoryData object
#153
mogres
opened
1 year ago
2
Center position data for smoldyn and medyan
#152
ascibisz
closed
1 year ago
1
Add New Data Types for Simularium Frame Data
#151
ascibisz
closed
12 months ago
0
Implement data structures for entire dataset slicing
#150
blairlyons
opened
1 year ago
1
Update example Jupyter notebooks
#149
blairlyons
closed
1 year ago
0
Feature/auto handle scale factor
#148
ascibisz
closed
1 year ago
1
Feature/auto handle scale factor
#147
ascibisz
closed
1 year ago
1
Automatically handle scale factor
#146
blairlyons
closed
1 year ago
0
Center Smoldyn and MEDYAN data
#145
blairlyons
closed
1 year ago
0
Fix default display data
#144
blairlyons
closed
1 year ago
1
Update template to match new design
#143
meganrm
closed
8 months ago
0
Feature/progress callback on converters
#142
ascibisz
closed
1 year ago
0
Feature/input data errors
#141
ascibisz
closed
1 year ago
2
Jagged list for agent data
#140
ascibisz
closed
1 year ago
1
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