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sirius-ms
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sirius
SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)
GNU Affero General Public License v3.0
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Question about using ClusteredMGF extracted from GNPS jobs
#70
Rommelio-coli
closed
1 year ago
1
Sirius 5 - MZmine 3 Integration
#69
SteffenHeu
closed
4 weeks ago
5
All services except FingerID RestAPI available (Proxy)
#68
SteffenHeu
closed
2 years ago
6
Distributions without JAVA
#67
bernt-matthias
closed
2 years ago
3
Zodiac job crashing
#66
titodamiani
closed
2 years ago
1
[Feature request] Make `Command`available to copy-paste
#65
Adafede
closed
2 years ago
1
FBMN Export: Partial quant table export only?
#64
Adafede
closed
2 years ago
7
Problem exporting Alligned feature list gap-filled filtered (MZMine2) for SIRIUS
#63
Jsanzmoxo
closed
2 years ago
3
Running sirius failed even with the demo_data
#62
YUANMY2021
closed
2 years ago
5
sirius-5.4.0-SNAPSHOT-osx64.pkg: does not start on macOS Monterey
#61
mlocardpaulet
closed
2 years ago
2
Update jmztab-m to latest available version 1.0.6
#60
nilshoffmann
closed
2 years ago
1
Unexpected error : java.lang.NullPointerException: Cannot invoke "de.unijena.bioinf.ms.gui.net.ConnectionMonitor$ConnetionCheck.isConnected()"
#59
simmlerc
closed
2 years ago
2
Sirius only partially imports MS2 spectra from mzML/mzXML files
#58
expoexplore
opened
2 years ago
8
Negative ionization mode interpretation in Sirius MS format
#57
AharoniLab
closed
2 years ago
1
(v4.9.8 and v4.9.12) - "Error when try to connect to Server" and "Time out" errors
#56
Tomnl
closed
2 years ago
11
How to set the adduct ion type to [2M+H] or [2M-H]?
#55
CUCOCC
closed
2 years ago
2
CHARGE error
#54
yellow-byte
closed
2 years ago
1
Under win10, sirius can run normally, but after upgrading to Win11, sirius cannot run normally
#53
linkai1208
closed
2 years ago
2
Sirius job crashed
#52
louwenjjr
closed
2 years ago
3
Instability of CSI:FingerID Server
#51
Rommelio-coli
closed
2 years ago
4
[Feature request] Add option to write all candidates in the summaries
#50
Adafede
closed
2 years ago
4
[Feature request] Add canopus_npc export
#49
Adafede
closed
2 years ago
1
Error in Linux executable vs MacOS executable
#48
eeko-kon
closed
2 years ago
1
Implement fragmentation tree method?
#47
xxing9703
closed
2 years ago
5
Result Interpretation - missing "Posterior Probability or Normalized Scores" in the TSV Result Files
#46
zmahnoor14
closed
2 years ago
1
Data conversion issue: mgf vs. mzML
#45
stolltho
closed
1 year ago
1
Could not load Custom Database ... DB seems to be corrupted and should be deleted and re-imported
#44
gjgetzinger
closed
2 years ago
1
Sirius issues
#43
eeko-kon
closed
3 years ago
12
Question/Request: offline (custom) databases
#42
rickhelmus
closed
2 years ago
4
Are naturally protonated [M]+ adducts correctly interpreted?
#41
nirshahaf
opened
3 years ago
2
customize summary files
#40
yellow-byte
closed
2 years ago
1
unexpected error when starting gui
#39
xxing9703
closed
2 years ago
3
Running Sirius 4.8.2 through Qemistree
#38
bsedio
closed
2 years ago
1
A fatal error of the Java Runtime Environment when running Sirius 4.8.2 to process mass data
#37
jeep3
closed
2 years ago
5
Exporting results
#36
ykim7263
closed
2 years ago
3
X11 DISPLAY error on remote linux server
#35
louwenjjr
closed
3 years ago
2
Input .mzXML file, but nothing happened, formular annotation on "MS1 only" supported?
#34
xxing9703
closed
3 years ago
4
Windows CLI troubles
#33
rickhelmus
closed
3 years ago
12
How to access CANOPUS confidence scores?
#32
wkumler
closed
3 years ago
4
Specifying enforced elements in .ms file
#31
pleeferguson
closed
3 years ago
3
java.io.IOException: Database have to be a directory of .csv xor .json files
#30
nirshahaf
closed
2 years ago
3
Mistakes in fragmentation tree and output spectra labels
#29
nirshahaf
closed
4 weeks ago
9
Definition of the candidate fingerprint binary format
#28
bachi55
closed
2 years ago
4
Formula decomposition of higher masses
#27
nirshahaf
opened
3 years ago
3
Blocking issues
#26
nirshahaf
closed
2 years ago
16
SIRIUS command line with MS1 only data?
#25
jorainer
closed
2 years ago
7
Trees
#24
nirshahaf
closed
3 years ago
5
Sirius similarity
#23
nirshahaf
closed
2 years ago
3
Error when loading confidence SVMs
#22
nirshahaf
closed
3 years ago
2
Hello! I have some troubles using Sirius
#21
llbbhh112233
closed
3 years ago
10
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