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sirius-ms
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sirius
SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)
GNU Affero General Public License v3.0
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The differences between table formula_identifications_adducts and formula_identifications
#120
peijiying
closed
1 year ago
1
no formula_candidate.tsv OR structure_candidate.csv
#119
zmahnoor14
closed
1 year ago
2
Web-based tools not accessible
#118
gfschnei
opened
1 year ago
1
Unexpected molecular formulas in fragment annotations by Sirius
#117
AharoniLab
closed
1 year ago
2
Webservice Connection unavaliable
#116
kuntuse
closed
1 year ago
1
InvalidException: Cannot find a proper ion mode/adduct type for the given spectrum
#115
JosieHong
closed
1 year ago
2
Question: CSI:FingerID scores interpretation
#114
titodamiani
opened
1 year ago
0
Connection Issues
#113
Zhangantai
closed
1 year ago
14
Webservice drops
#112
elnurgar
closed
1 year ago
4
How to run in CLI mode
#111
verl166
closed
1 year ago
4
Email and password printed out in terminal
#110
eeko-kon
closed
1 year ago
2
App crashes on macOS Ventura 13.0
#109
tolimika
closed
1 year ago
4
formulas in mgf are ignored when running SIRIUS from command line
#108
YasinEl
closed
1 year ago
1
ftree-export does could not parse compounds
#107
YasinEl
closed
1 year ago
1
Custom-database CLI
#106
zmahnoor14
closed
3 weeks ago
5
Custom database
#105
saroltm
opened
1 year ago
1
connection error
#104
kuntuse
closed
1 year ago
1
Unexpected error!
#103
AndreaCa96
closed
1 year ago
2
unexpected error when starting sirius
#102
AndreaCa96
closed
1 year ago
2
Unexpected error: java.lang.NullPointerException: Server URL is null!
#101
zinuo-H
closed
1 year ago
2
There is a problem with the network connection.
#100
CUCOCC
closed
1 year ago
1
SIRIUS 5.6.3 Structure Names
#99
dawa90
closed
1 year ago
1
SIRIUS4 Server Connection Issue
#98
li-chin
closed
1 year ago
2
some problems with the network service
#97
kuntuse
closed
1 year ago
1
missing features in Sirius-summary (time-out ?)
#96
eimichae85
opened
1 year ago
2
Export of Tanimoto similarity to structure_candidates.tsv
#95
JethroHemmann
opened
1 year ago
2
Could not load a valid TreeBuilder (ILP solvers), tried ‘[CLP, GUROBI, CPLEX]’. Please read the installation instructions
#94
Rommelio-coli
closed
1 year ago
2
CVE-2022-42889 Vulnerability in commons-text-1.6.jar
#93
neerajwadhwa-lcci
closed
1 year ago
1
structure database search command line selecting 'all' databases: no fingerprints generated
#92
helenamrusso
closed
1 year ago
1
Webservice unavailable
#91
ivana67000
closed
1 year ago
1
Fingerprints are not generated - Sirius 4.8.2
#90
helenamrusso
closed
1 year ago
1
Added Trigger Actions on sirius-client-openAPI
#89
LukasScholz
closed
1 year ago
0
Crash by NullPointerException, version 5.6.3
#88
mapio
closed
1 year ago
8
Possible to compute for specified list of a few hundred compounds?
#87
meenachakra
opened
1 year ago
4
Issue with csi-finger ID server - MSNovelist
#86
anshulg825
closed
1 year ago
0
argument "src" is null
#85
SarahLenn
closed
1 year ago
4
Unmatched argument
#84
Coayala
closed
1 year ago
2
Is it possible to use [M]+ as a possible adduct in SIRIUS?
#83
pbjarterot
closed
1 year ago
2
Linux GUI binary missing
#82
rwst
closed
1 year ago
2
Workers availability
#81
MuyaoXi9271
closed
1 year ago
13
SIRIUS 5 fails to open in Manjaro Linux
#80
Dmente92
closed
1 year ago
2
Missing result when executing the example data
#79
XinsongDu
closed
1 year ago
1
Cannot use command-line version
#78
XinsongDu
closed
1 year ago
1
conda install -c bioconda sirius-csifingerid
#77
eeko-kon
closed
1 year ago
2
Question: difference between ‘canopus_formula_summary.tsv’ and ‘canopus_compound_summary.tsv’?
#76
titodamiani
closed
2 years ago
2
External server is down!
#75
eeko-kon
closed
2 years ago
6
Versioned *.ms file format
#74
sneumann
opened
2 years ago
0
CANOPUS prediction based on NPClassifier?
#73
titodamiani
closed
2 years ago
2
Question about LC-MS batch alignment in SIRIUS 4.9.15
#72
Rommelio-coli
closed
2 years ago
1
Cannot connect to Server - No valid refresh token Available
#71
titodamiani
closed
2 years ago
7
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