sjanssen2 spike issues - Githubissues

sjanssen2 / spike

NGS pipeline for SNV detection in tumor context

BSD 3-Clause "New" or "Revised" License

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Freezing "Downloading remote packages."

#202 deyazoubi closed 5 years ago
2
Sample Processing Flowcell 110919

#201 deyazoubi opened 5 years ago
0
New ss

#200 deyazoubi closed 5 years ago
0
Original barcode nucleotide

#199 deyazoubi closed 5 years ago
0
remove the first barcode nucleotide

#198 deyazoubi closed 5 years ago
2
duplicate the first barcode nucleotide

#197 deyazoubi closed 5 years ago
0
lane-swap did not improve the yield

#196 deyazoubi closed 5 years ago
0
lane swap

#195 deyazoubi closed 5 years ago
0
samplesheets 190821_SN737_0472_BCDPEFACXX_spike.csv

#194 deyazoubi closed 5 years ago
2
new file: data/samplesheets/190821_SN737_0472_BCDPEFACXX_spike.csv

#193 deyazoubi closed 5 years ago
0
4 samplesheets for the latest runs, already 90% processed

#192 LayalYasin closed 5 years ago
0
two similar adapters?

#191 LayalYasin opened 5 years ago
2
Sujal Gosh provided additional information about two families.

#190 sjanssen2 opened 5 years ago
0
Sample Processing Flowcell

#189 deyazoubi opened 5 years ago
0
Update README.md

#188 deyazoubi closed 5 years ago
0
adding another sample sheet for a microbiome project

#187 sjanssen2 closed 5 years ago
0
try to activate Travis and Coveralls

#186 sjanssen2 closed 5 years ago
1
add chmod g+w * to rule merge_vcfs

#185 deyazoubi opened 5 years ago
5
I manually changed barcodes for lane3 following Suji<92>s advice.

#184 sjanssen2 closed 5 years ago
4
barcode reverse compliment

#183 LayalYasin closed 5 years ago
3
adding a new sample sheet for microbiome samples

#182 sjanssen2 closed 5 years ago
5
Test sj

#181 sjanssen2 closed 5 years ago
0
the correct name of Backup_NAS_name is "Praios" Sample Sheet 0467

#180 deyazoubi closed 5 years ago
0
the correct name of Backup_NAS_name is "Praios" SampleSheet 0466

#179 deyazoubi closed 5 years ago
0
read 2 additional columns from bamststs file

#178 LayalYasin opened 5 years ago
3
uploaded new genepanel for sujal, project: ALPS

#177 LayalYasin closed 5 years ago
0
added the genepanel: Sujal_Gosh to project Alps

#176 LayalYasin closed 5 years ago
7
suggested additional command to set permissions

#175 sjanssen2 opened 5 years ago
0
fixing sample name KB0195_c whitespace

#174 sjanssen2 closed 5 years ago
1
reverting back to build 1, which was default before.

#173 sjanssen2 closed 5 years ago
0
add role, entity to ALPS_71 ALPS_72 and fix Sample_Project

#172 sjanssen2 closed 5 years ago
0
Current Sample Processing

#171 sjanssen2 opened 5 years ago
1
New snupy three

#170 sjanssen2 closed 5 years ago
0
tumor entity in metadata

#169 sjanssen2 opened 5 years ago
0
duos: substitute missing parent with pool of mothers / fathers as done in Dresden

#168 sjanssen2 opened 5 years ago
0
demux report barcodes are all "unknown"

#167 sjanssen2 opened 5 years ago
2
snupy with multiple instances

#166 sjanssen2 closed 5 years ago
0
Add genepanels

#165 sjanssen2 closed 5 years ago
0
Single end

#164 sjanssen2 closed 5 years ago
0
updated sample names, according to Sebastian Ginzels list for Inform …

#163 sjanssen2 opened 5 years ago
0
new case distinction for tumor/normal samples that use entity_id or s…

#162 sjanssen2 closed 5 years ago
0
16strimming

#161 sjanssen2 closed 5 years ago
0
docs: how to get FTP access

#160 sjanssen2 closed 5 years ago
0
Docu

#159 sjanssen2 closed 5 years ago
0
Keimbahn fixes

#158 sjanssen2 closed 5 years ago
0
rejoin log

#157 sjanssen2 opened 5 years ago
0
adding explicit test if excavator plots have been created

#156 sjanssen2 closed 5 years ago
0
Minor fixes

#155 sjanssen2 closed 5 years ago
0
use correct sample name for excavator somatic

#154 sjanssen2 closed 5 years ago
0
case distinction for varscan tumor/normal file names of spike

#153 sjanssen2 closed 5 years ago
0

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