smirarab pasta issues - Githubissues

smirarab / pasta

PASTA (Practical Alignment using SATe and Transitivity)

GNU General Public License v3.0

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issues

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drop the now unsupported U mode for open file

#70 sjanssen2 closed 1 month ago
0
The alignment file has no sequences. PASTA quits.

#69 TanHoa-DinhNguyen opened 3 months ago
0
Tree parse error: unexpected token '_os_78_oe_ropschr02g03077' -- not recognized as a sequence name

#68 erya-song opened 5 months ago
1
Adapt Pasta to the current version of DendroPy

#67 simeonborko opened 6 months ago
1
dependencies: dendropy v4.5.2

#66 simeonborko opened 6 months ago
2
create release

#65 sjanssen2 closed 9 months ago
1
problem with pasta

#64 ChaoShenzjs closed 5 months ago
3
Failed to run hmmeralign

#63 marinamashintsova opened 1 year ago
4
Unsupported operand types with guide tree

#62 isgilman closed 2 years ago
2
Continue crashed analysis from tree inference step

#61 diegomarquezp opened 3 years ago
8
Crashed in tree building step

#60 diegomarquezp closed 3 years ago
2
soft link dependency locations in conda build script

#59 krinsman closed 1 year ago
1
ValueError: The alignment file has no sequences. PASTA quits.

#58 srautonu closed 3 years ago
1
Issue running default settings

#57 antoinekoehl closed 3 years ago
5
Docker not working with MUSCLE aligner

#56 A-Swafford closed 5 months ago
2
Terminated abnormally

#55 lalalagartija closed 4 years ago
2
GUI error: Bad CPU type in executable

#54 pwkooij closed 5 months ago
13
GUI does not start the alignment

#53 golgicik closed 4 years ago
1
Why aren't Saté & Pasta listed in the "External Tools" aligners?

#52 hhg7 closed 1 month ago
1
Job is taking too much time for insitutional HPC and has poor CPU efficiency

#51 clb21565 closed 4 years ago
4
TreeShrink error

#50 sjfleck opened 4 years ago
8
Pasta fails with no error, job just disappears

#49 hhg7 closed 4 years ago
4
Pasta fails with homologs and muscle -> no sequences

#48 hhg7 opened 4 years ago
4
Update README.md

#47 justincbagley closed 4 years ago
0
readme linux/mac instructions are swapped

#46 lauralwd closed 4 years ago
4
Update README

#45 koditaraszka closed 4 years ago
0
GINSI appears to be missing from binary bundle

#44 brantfaircloth closed 4 years ago
1
update Docker file for java

#43 smirarab closed 5 years ago
0
Conda

#42 smirarab closed 5 years ago
0
Better describe the --treeshrink-filter option

#41 smirarab opened 5 years ago
0
Bioconductor install doesn't work

#40 brendanf opened 5 years ago
1
error on identical alignments

#39 B10KGenomes closed 5 years ago
1
small issue with run_pasta_gui.py and run_pasta.py -h or -i options.

#38 kibet-gilbert closed 5 years ago
2
Error opal.jar

#37 sumoumouElin closed 5 years ago
10
GUI unable to setup configuration file

#36 NElnour closed 5 years ago
9
--num_cpus didn't work for me

#35 mcsimenc closed 5 years ago
2
added checks in setup.py and made it compatible with python 3

#34 koditaraszka closed 6 years ago
0
Added Dockerfile

#33 niemasd closed 6 years ago
0
Docker image instead of VM

#32 niemasd closed 5 years ago
3
Fixed tab/space issue in setup.py

#31 niemasd closed 6 years ago
0
Issues in setup.py

#30 niemasd opened 6 years ago
10
Update README.md

#29 koditaraszka closed 6 years ago
0
new sub-aligners within PASTA

#28 koditaraszka closed 6 years ago
0
init_aln is not registered as a temporary directory that was created by this process

#27 jpearl01 opened 6 years ago
0
Using logging system everywhere

#26 smirarab closed 6 years ago
1
extra ;

#25 smirarab closed 5 years ago
0
Fixed bug in mincluster

#24 uym2 closed 6 years ago
0
remove the problematic commit

#23 uym2 closed 6 years ago
0
New decomposition: minimum clustering

#22 uym2 closed 6 years ago
0
update settings.py, tools.py, and setup.py

#21 koditaraszka closed 6 years ago
0