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smithlabcode
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ribotricer
A tool for accurately detecting actively translating ORFs from Ribo-seq data
http://doi.org/djv4
GNU General Public License v3.0
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Bump pandas from 1.3.5 to 1.4.1
#112
dependabot[bot]
closed
2 years ago
0
Bump scipy from 1.7.3 to 1.8.0
#111
dependabot[bot]
closed
2 years ago
0
Bump numpy from 1.21.5 to 1.22.2
#110
dependabot[bot]
closed
2 years ago
0
Bump pyfaidx from 0.6.3.1 to 0.6.4
#109
dependabot[bot]
closed
2 years ago
0
RPF counts to TPM conversion
#108
HiteshKore
closed
2 years ago
2
Bump pandas from 1.3.5 to 1.4.0
#107
dependabot[bot]
closed
2 years ago
1
Bump numpy from 1.21.5 to 1.22.1
#106
dependabot[bot]
closed
2 years ago
1
Bump numpy from 1.21.5 to 1.22.0
#105
dependabot[bot]
closed
2 years ago
1
Bump numpy from 1.21.4 to 1.21.5
#104
dependabot[bot]
closed
2 years ago
0
Internal ORFs
#103
annebresciani
opened
2 years ago
2
Allow input of already p-shifted reads (bigwig)
#102
Roleren
closed
3 weeks ago
4
Bump pandas from 1.3.4 to 1.3.5
#101
dependabot[bot]
closed
2 years ago
0
Bump matplotlib from 3.5.0 to 3.5.1
#100
dependabot[bot]
closed
2 years ago
0
Bump scipy from 1.7.2 to 1.7.3
#99
dependabot[bot]
closed
2 years ago
0
Bump pysam from 0.17.0 to 0.18.0
#98
dependabot[bot]
closed
2 years ago
0
Bump matplotlib from 3.4.3 to 3.5.0
#97
dependabot[bot]
closed
2 years ago
0
Bump scipy from 1.7.1 to 1.7.2
#96
dependabot[bot]
closed
2 years ago
0
Bump numpy from 1.21.3 to 1.21.4
#95
dependabot[bot]
closed
2 years ago
0
Bump pyfaidx from 0.6.2 to 0.6.3.1
#94
dependabot[bot]
closed
2 years ago
0
Error while processing the Ribo-Seq data using transcriptome based index
#93
HiteshKore
closed
2 years ago
2
Confusion about orf information
#92
lbwfff
closed
1 year ago
12
Queries regarding Ribo-Seq analysis
#91
HiteshKore
closed
2 years ago
7
Bump numpy from 1.21.2 to 1.21.3
#90
dependabot[bot]
closed
2 years ago
0
Bump pandas from 1.3.3 to 1.3.4
#89
dependabot[bot]
closed
2 years ago
0
Bump click from 8.0.2 to 8.0.3
#88
dependabot[bot]
closed
2 years ago
0
Bed format output needed
#87
freeedog
closed
2 years ago
1
Can ribotricer infer translation start position?
#86
freeedog
closed
2 years ago
1
Bump click from 8.0.1 to 8.0.2
#85
dependabot[bot]
closed
2 years ago
0
About ORF nucleotide sequence
#84
lbwfff
closed
2 years ago
1
Bump pysam from 0.16.0.1 to 0.17.0
#83
dependabot[bot]
closed
2 years ago
0
Bump tqdm from 4.62.2 to 4.62.3
#82
dependabot[bot]
closed
2 years ago
0
Bump pandas from 1.3.2 to 1.3.3
#81
dependabot[bot]
closed
2 years ago
0
Bump pyfaidx from 0.6.1 to 0.6.2
#80
dependabot[bot]
closed
2 years ago
0
Bump tqdm from 4.62.1 to 4.62.2
#79
dependabot[bot]
closed
2 years ago
0
Bump tqdm from 4.62.0 to 4.62.1
#78
dependabot[bot]
closed
2 years ago
0
Bump numpy from 1.21.1 to 1.21.2
#77
dependabot[bot]
closed
2 years ago
0
Bump pandas from 1.3.1 to 1.3.2
#76
dependabot[bot]
closed
2 years ago
0
Bump matplotlib from 3.4.2 to 3.4.3
#75
dependabot[bot]
closed
2 years ago
0
Bump scipy from 1.7.0 to 1.7.1
#74
dependabot[bot]
closed
2 years ago
0
Bump tqdm from 4.61.2 to 4.62.0
#73
dependabot[bot]
closed
2 years ago
0
Bump pandas from 1.3.0 to 1.3.1
#72
dependabot[bot]
closed
2 years ago
0
Bump numpy from 1.21.0 to 1.21.1
#71
dependabot[bot]
closed
2 years ago
0
Bump pyfaidx from 0.6.0 to 0.6.1
#70
dependabot[bot]
closed
2 years ago
0
Unable to reproduce results from published studies
#69
HiteshKore
closed
2 years ago
8
Bump click-help-colors from 0.9 to 0.9.1
#68
dependabot[bot]
closed
2 years ago
0
Bump tqdm from 4.61.1 to 4.61.2
#67
dependabot[bot]
closed
2 years ago
0
Bump pandas from 1.2.5 to 1.3.0
#66
dependabot[bot]
closed
2 years ago
0
Bump pyfaidx from 0.5.9.5 to 0.6.0
#65
dependabot[bot]
closed
2 years ago
0
[BUG]
#64
Furciferi
closed
3 years ago
1
Bump pandas from 1.2.4 to 1.2.5
#63
dependabot[bot]
closed
3 years ago
0
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