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snakemake-workflows
/
dna-seq-mtb
A flavor of https://github.com/snakemake-workflows/dna-seq-varlociraptor preconfigured for molecular tumor boards
MIT License
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fix: remove custom paths
#48
FelixMoelder
closed
1 week ago
0
chore: release 1.8.0
#47
github-actions[bot]
closed
1 month ago
1
chore: release 1.7.0
#46
github-actions[bot]
closed
1 month ago
1
perf: update to dna-seq-varlociraptor 5.6.0
#45
johanneskoester
closed
2 months ago
0
chore: release 1.6.3
#44
github-actions[bot]
closed
1 month ago
0
chore: release 1.6.2
#43
github-actions[bot]
closed
3 months ago
1
fix: update to dna-seq-varlociraptor 5.4.0
#42
johanneskoester
closed
3 months ago
0
feat: update callsets and scenario
#41
FelixMoelder
closed
1 month ago
0
chore: release 1.6.1
#40
github-actions[bot]
closed
3 months ago
1
fix: update to dna-seq-varlociraptor 5.3.1
#39
johanneskoester
closed
3 months ago
0
chore: release 1.6.0
#38
github-actions[bot]
closed
4 months ago
1
feat: support dna-seq-varlociraptor 5.3.0
#37
FelixMoelder
closed
4 months ago
0
feat: update config
#36
FelixMoelder
closed
5 months ago
0
feat: update pathogenic callset
#35
FelixMoelder
closed
8 months ago
0
fix: update parameters and callsets
#34
FelixMoelder
closed
5 months ago
0
fix: ffpe event handling now correctly considers the provided purity
#33
johanneskoester
opened
1 year ago
1
fix: do not remove any splicing related candidate variant
#32
johanneskoester
closed
1 year ago
0
fix: set lowercase column names
#31
FelixMoelder
closed
1 year ago
1
chore: release 1.5.0
#30
github-actions[bot]
closed
5 months ago
1
perf: update to dna-seq-varlociraptor 3.24.2
#29
johanneskoester
closed
1 year ago
0
fix: for callsets with known variants, also include ffpe artifacts
#28
johanneskoester
closed
1 year ago
0
chore: release 1.4.1
#27
github-actions[bot]
closed
1 year ago
1
fix: Update vembrane
#26
FelixMoelder
closed
1 year ago
0
perf: update to dna-seq-varlociraptor 3.23.0
#25
johanneskoester
closed
1 year ago
0
chore: release 1.4.0
#24
github-actions[bot]
closed
1 year ago
1
feat: Split callsets by allele frequency
#23
FelixMoelder
closed
1 year ago
0
feat: split pathogenic callsets into more certain and only potential ones
#22
johanneskoester
closed
1 year ago
0
chore: release 1.3.4
#21
github-actions[bot]
closed
1 year ago
1
perf: update to dna-seq-varlociraptor 3.19.4
#20
johanneskoester
closed
1 year ago
0
chore: release 1.3.3
#19
github-actions[bot]
closed
1 year ago
1
fix: check whether sex is correctly specified in sample sheet
#18
johanneskoester
closed
1 year ago
0
chore: release 1.3.2
#17
github-actions[bot]
closed
1 year ago
1
fix: update to dna-seq-varlociraptor 3.19.3
#16
johanneskoester
closed
1 year ago
0
Scenario rendering does not work with given sex
#15
sci-kai
closed
1 year ago
1
fix: properly update config in case it is given via a module definition
#14
johanneskoester
closed
1 year ago
0
chore: release 1.3.1
#13
github-actions[bot]
closed
1 year ago
1
perf: update to dna-seq-varlociraptor 3.18.2
#12
johanneskoester
closed
1 year ago
0
chore: release 1.3.0
#11
github-actions[bot]
closed
1 year ago
1
feat: update to dna-seq-varlociraptor 3.18.1
#10
johanneskoester
closed
1 year ago
0
chore: release 1.2.1
#9
github-actions[bot]
closed
1 year ago
0
fix: allow somatic-normal mutations above VAF 0.5
#8
johanneskoester
closed
1 year ago
0
chore: release 1.2.0
#7
github-actions[bot]
closed
2 years ago
1
feat: Render config for loh and somatic variants
#6
FelixMoelder
closed
2 years ago
0
chore: release 1.1.0
#5
github-actions[bot]
closed
2 years ago
1
fix: Fix labels
#4
FelixMoelder
closed
2 years ago
0
chore: release 1.0.1
#3
github-actions[bot]
closed
2 years ago
1
chore: release 1.0.0
#2
github-actions[bot]
closed
2 years ago
1
feat: Add event for splice mutations, consider FFPE substrates
#1
FelixMoelder
closed
2 years ago
0