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snaketron
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ClustIRR
Clustering of immune receptor repertoires
GNU General Public License v3.0
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get_graph mapps CDR3s to VDJdb. We need flexible mapping function
#35
snaketron
closed
1 month ago
1
Removed input param 'local_min_ove'
#34
snaketron
closed
1 month ago
0
mcparallel -> future
#33
snaketron
closed
1 week ago
2
test tcrdist input, provide vignette
#32
snaketron
opened
2 months ago
0
param for search depth, current 70% identity. Make user-param in joint graph and in global clustering
#31
snaketron
closed
1 month ago
2
default <= weight -> set to 0
#30
snaketron
opened
2 months ago
0
compare controls func.
#29
snaketron
closed
1 month ago
1
directed graph?
#28
snaketron
closed
11 months ago
1
graph.R and plot_graph.Rd
#27
snaketron
closed
8 months ago
0
NAMESPACE file
#26
snaketron
closed
1 year ago
2
check cdr3a / cdr3b plotting
#25
kaozkai
closed
1 year ago
0
Add get_igraph() function
#24
kaozkai
closed
1 year ago
1
Version comparison vignette
#23
kaozkai
closed
1 year ago
0
Finish vignette
#22
kaozkai
closed
1 year ago
0
Integrate trim warning
#21
kaozkai
closed
1 year ago
1
Find gliph3 difference supporting dataset for vignette
#20
kaozkai
closed
8 months ago
1
Rewrite README.md
#19
kaozkai
closed
1 year ago
0
Rewrite package description
#18
kaozkai
closed
1 year ago
0
React to user feedback
#17
kaozkai
closed
8 months ago
0
additional vignette about version comparison
#16
kaozkai
closed
1 year ago
0
package vignette
#15
kaozkai
closed
1 year ago
0
small examples at the end of man files
#14
kaozkai
closed
1 year ago
0
man files (e.g. using roxygen)
#13
kaozkai
closed
1 year ago
0
unit tests
#12
kaozkai
closed
1 year ago
0
Check gliphR 1 algorithm
#11
kaozkai
closed
1 year ago
0
Add additional features
#10
kaozkai
closed
8 months ago
0
Bioconductor changes
#9
kaozkai
closed
8 months ago
0
Submission process
#8
kaozkai
closed
8 months ago
0
BiocCheck Status
#7
kaozkai
closed
1 year ago
2
clustering algorithm in gliphR -> Bioconductor package
#6
snaketron
closed
1 year ago
1
What should be the main input (data_sample) of gliphR?
#5
snaketron
closed
1 year ago
2
New input checks
#4
snaketron
closed
1 year ago
0
Bechmarking needed
#3
snaketron
closed
1 year ago
0
General TODO's to make R-package suitable for Bioconductor
#2
snaketron
closed
1 year ago
0
For global distances allow "interface" to tcrdist3
#1
snaketron
closed
1 year ago
1