soedinglab metaeuk issues

soedinglab / metaeuk

MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics

GNU General Public License v3.0

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issues

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predicted proteins not starting with M ?

#43 Tkastylevsky opened 2 years ago
2
Request for better documentation of aggregatetax module

#42 IanDMedeiros closed 2 years ago
3
[Feature Request] Option to choose between MMSeqs2 and Diamond?

#41 jolespin closed 1 year ago
5
Unable to run metaeuk taxtocontig

#40 Sidduppal closed 2 years ago
2
I can't find 'contigs' output to pass to taxtocontig

#39 drelo closed 2 years ago
3
Used EukRep and then MetaEuk but the output is mostly bacteria

#38 ereyred opened 2 years ago
7
limit / reduce disk space usage

#37 chrishah opened 2 years ago
3
The gff format is wrong?

#36 xiekunwhy closed 7 months ago
14
How to use EST sequence as databse instead of protein?

#35 xiekunwhy closed 2 years ago
4
mention of multithreading but no documentation of using it

#34 pdimens closed 3 years ago
2
metaEuk does not output a gff

#33 angelovaag closed 3 years ago
2
[Feature Request] Custom protein and codon file extensions (and GFF?) and few minor questions

#32 jolespin closed 3 years ago
5
Taxdatabase error

#31 H1889 closed 7 months ago
13
Any tutorials or example of end to end workflows?

#30 jolespin closed 3 years ago
1
How to visualize metaeuk results?

#29 JSSaini closed 3 years ago
2
Can this be used with transcript contigs?

#28 jolespin closed 3 years ago
3
metaeuk taxtocontig could not go through

#27 cam315 closed 2 years ago
7
Taxtocontig Error at Prefilter Step

#26 ys117vt closed 3 years ago
11
Taxotocontig test file run issue

#25 ys117vt closed 3 years ago
6
Easy-Predict/Reading results step error: swap results died

#24 ys117vt closed 3 years ago
21
easy-predict output

#23 nixoIas closed 3 years ago
3
Metaeuk dies with 'Cannot close data file .../nucl_6f' or similar

#22 RaverJay closed 3 years ago
5
Stop codons apparently excluded from output

#21 nhartwic closed 3 years ago
3
type of compression ?

#20 michoug closed 3 years ago
3
Missing tax_per_pred_aln during taxtocontig

#19 michoug closed 3 years ago
2
Excepted size prefilter and --disk-space-limit

#18 michoug opened 3 years ago
3
Query sequence type not implemented!

#17 olekto closed 3 years ago
6
Question: multicellular eukaryotes?

#16 Ahmed-Shibl closed 3 years ago
1
Does the pipeline filter eukaryotes in the first stage?

#15 drelo closed 3 years ago
2
Update README.md

#14 Juke34 closed 3 years ago
0
Exon coordinates on negative strand

#13 bio-mmanni closed 3 years ago
3
reference gene set

#12 Francesca87 closed 3 years ago
3
Update conda version?

#11 berkelem closed 4 years ago
3
Terrestrial arthropods

#10 Tamtatatam closed 3 years ago
3
Why my metaeuk search is very slow?

#9 liuxianghui opened 4 years ago
3
Stalled at prefitering?

#8 cslamo closed 7 months ago
2
Fasta entry: 0 is invalid on RefSeq Fasta

#7 openpaul closed 4 years ago
1
Segfault with predictexons step (running easy-predict)

#6 domenico-simone closed 3 years ago
1
No docker image available on dockerhub?

#5 domenico-simone closed 4 years ago
6
Add option to output a GFF3 file

#4 apcamargo closed 3 years ago
2
Can not allocate entries memory in IndexTable::initMemory

#3 sarah872 closed 4 years ago
1
Broken MERC_MMETSP_Uniclust50_profiles.tar.gz

#2 sarah872 closed 4 years ago
3
broken link

#1 cslamo closed 4 years ago
5