sourmash-bio sourmash_plugin_containment_search issues

sourmash-bio / sourmash_plugin_containment_search

An improved `search --containment` for sourmash

BSD 3-Clause "New" or "Revised" License

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issues

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todo: deprecate this plugin in favor of `manysearch` from the branchwater plugin

#21 ctb opened 1 month ago
1
MRG: upgrade argument handling

#20 ctb closed 2 months ago
0
MRG: allow multiple metagenomes per db; add ANI column

#19 ctb closed 2 months ago
0
support a "selection search"?

#18 ctb opened 5 months ago
1
`mgmanysearch` errors out with no arguments

#17 ctb closed 1 month ago
1
MRG: add dependabot

#16 ctb closed 7 months ago
0
MRG: test & handle various `scaled` mismatches

#15 ctb closed 7 months ago
0
MRG: fix error with abund queries x abund subjects

#14 ctb closed 7 months ago
0
can only intersect flat MinHash objects

#13 AnneliektH closed 7 months ago
3
consider supporting picklist-style usage of output from `manysearch` and mastiff => optimization

#12 ctb opened 8 months ago
0
MRG: more tests, minor cleanup

#11 ctb closed 8 months ago
0
consider integrating / using YACHT?

#10 ctb opened 8 months ago
0
todo: remove TODO items from README :)

#9 ctb closed 8 months ago
0
test: empty intersections with abundance

#8 ctb opened 8 months ago
0
request: get an expert to review the ANI code

#7 ctb closed 7 months ago
2
list index out of range error

#6 AnneliektH closed 8 months ago
1
todo: provide command for multiple queries

#5 ctb closed 8 months ago
1
test: issues with scaled/downsampling

#4 ctb opened 8 months ago
0
MRG: add `mgmanysearch`; support better abundance stuff; improve docs.

#3 ctb closed 8 months ago
0
MRG: add basic tests

#2 ctb closed 8 months ago
0
MRG: add more columns, including ANI, by using `PrefetchResult`

#1 ctb closed 8 months ago
1