ssantichaivekin empress issues

ssantichaivekin / empress

Systematic Cophylogeny Reconciliation Tool under Duplication-Transfer-Loss Model.

https://sites.google.com/g.hmc.edu/empress/

15 stars 6 forks source link

issues

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Newest Most commented Recently updated Oldest Least commented Least recently updated

Can't read input files: "list index out of range"

#259 kriskaykj opened 11 months ago
7
OverflowError: int too large to convert to float

#258 MonsterLaplace opened 1 year ago
0
Update Readme.md

#257 ssantichaivekin opened 1 year ago
0
Time inconsistent reconciliation

#256 tomas-najer opened 1 year ago
0
Can I input iqtree .treefile format

#255 xsq2022 opened 1 year ago
0
Bump setuptools from 60.5.0 to 65.5.1

#254 dependabot[bot] opened 1 year ago
0
Everything Black

#253 Alex-Grossi opened 1 year ago
0
Unable to to open empress GUI

#252 bimbim1803 opened 1 year ago
0
Don't relock pipenv dependencies

#251 ssantichaivekin opened 2 years ago
0
Bump pillow from 9.0.0 to 9.0.1

#250 dependabot[bot] opened 2 years ago
1
Plot error message to screen when rendering inconsistent reconciliation

#249 ssantichaivekin closed 2 years ago
0
Bump numpy from 1.20.3 to 1.21.0

#248 dependabot[bot] closed 2 years ago
1
GUI: Reconciliations not displayed

#247 adsweet closed 2 years ago
6
Bump pillow from 8.2.0 to 9.0.0

#246 dependabot[bot] closed 2 years ago
1
Bump pillow from 8.2.0 to 8.3.2

#245 dependabot[bot] closed 2 years ago
1
Add executable permission to linux app

#244 ssantichaivekin closed 3 years ago
1
GUI: Set default save format to .pdf

#243 ssantichaivekin closed 3 years ago
0
Fix tanglegram gui not showing bug

#242 ssantichaivekin closed 3 years ago
0
GUI: Add "Display legend" checkbox in reconciliation window

#241 ssantichaivekin closed 3 years ago
0
GUI: Allow users to set font size for node names in tanglegram and reconciliation window

#240 ssantichaivekin closed 3 years ago
1
Add an option to increase/decrease font size in tanglegram and reconciliation window

#239 ssantichaivekin closed 3 years ago
1
Add an option to close legend in matplotlib reconciliation window

#238 ssantichaivekin closed 3 years ago
1
Codesign and notarize empress executable for macOS on GitHub Actions

#237 ssantichaivekin closed 3 years ago
0
Force empress app to run in light mode on macOS

#236 ssantichaivekin closed 3 years ago
0
Allow macOS notarization

#235 ssantichaivekin closed 3 years ago
1
Add application icon to Windows and macOS

#234 ssantichaivekin closed 3 years ago
0
Allow host tree and parasite tree to have the same node name

#233 ssantichaivekin closed 3 years ago
0
Cannot use host tree and parasite tree with same internal node names

#232 ssantichaivekin closed 3 years ago
0
Could not find lib c or load any of its variants []

#231 ssantichaivekin closed 3 years ago
3
Update pipfile & pipfile.lock

#230 ssantichaivekin closed 3 years ago
2
Cannot export reconciliation images as pdf

#229 Jorge-Dona closed 3 years ago
9
Support newick tree with no internal node names

#228 ssantichaivekin closed 3 years ago
0
Move all Readme.md content to wiki page

#227 ssantichaivekin closed 3 years ago
0
.zip on GitHub

#226 andersonbrito closed 3 years ago
1
GUI: Save figure dialog box not showing up

#225 ssantichaivekin opened 4 years ago
3
GUI: Fix toolbar error when changing reconciliation boolean options

#224 ssantichaivekin closed 4 years ago
1
GUI: empty reconciliation window when changing boolean options in cluster

#223 ssantichaivekin closed 4 years ago
0
Remove time from cli argument and code or add time to all of them

#222 ssantichaivekin opened 4 years ago
0
Fix parent of host root does not have .layout visualization bug

#221 ssantichaivekin closed 4 years ago
0
Reconciliation visualization bug: parent of host root does not have .layout

#220 ssantichaivekin closed 4 years ago
0
[PART 2] GUI: Fix old clusters do not get replaced bug

#219 ssantichaivekin closed 4 years ago
1
[PART 1] GUI: Fix reconciliation button graying out bug

#218 ssantichaivekin closed 4 years ago
0
Update readme to not use * for boolean arguments, improve clarity

#217 ssantichaivekin closed 4 years ago
0
Default output location for cost-regions

#216 ssantichaivekin closed 4 years ago
0
CLI: Clustering should output .csv

#215 aremath opened 4 years ago
0
CLI: Remove costscape default filename.

#214 aremath closed 4 years ago
0
CLI add reconciliation visualization to reconcile command

#213 aremath opened 4 years ago
0
CLI: Tell the user where files are created

#212 aremath opened 4 years ago
0
CLI: Remove spurious output

#211 aremath opened 4 years ago
1
Minor histogram readme update

#210 aremath closed 4 years ago
0