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stephenturner
/
qqman
An R package for creating Q-Q and manhattan plots from GWAS results
http://cran.r-project.org/web/packages/qqman/
GNU General Public License v3.0
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#73
junchcb
closed
4 months ago
0
Bugfix: manhattan.R now indexes with BP, not SNP which should be an optional column
#72
samuelejones
opened
6 months ago
0
Error in UseMethod("qq") : no applicable method for 'qq' applied
#71
littletiger311
opened
6 months ago
0
Add posibility to control annotation font size.
#70
bartosz-kozak
opened
1 year ago
0
Update qqman.Rmd
#69
smasongarrison
closed
1 year ago
1
x ticks not in the center of chromosome
#68
zpliu1126
opened
1 year ago
0
overlap labels in Manhattan plot
#67
catheriz
opened
1 year ago
0
Width of manhattan plot
#66
neginmb
closed
3 years ago
0
Refactored using dplyr functions
#65
calpan
closed
6 years ago
1
make annotatePval and annotateTop work with logp=FALSE
#64
timflutre
closed
6 years ago
2
Add flag to control annotation text size
#63
oyhel
closed
6 years ago
0
Column CHR not found!
#62
geneticsmcgill
closed
6 years ago
4
Increase font size of annotation
#61
jsreddy82
closed
6 years ago
2
Error due to very very small and/or NA P values
#60
zjuwhw
closed
6 years ago
1
Error: need finite 'ylim' values
#59
edwardphineas
closed
6 years ago
2
Something wrong in my dataset... but what?!
#58
edwardphineas
closed
6 years ago
6
trying to color qqplot points
#57
elsadebecker
closed
7 years ago
1
Question: how do I get all the chromosomes labels displayed on the x-axis?
#56
swvanderlaan
closed
7 years ago
3
Add a CITATION file and update DESCRIPTION
#55
daissi
closed
7 years ago
1
Possible to overlay manhattan plots?
#54
jamesrpriest
closed
7 years ago
1
Column CHR not found
#53
reddamez
closed
7 years ago
3
warning for annotatePval
#52
ruoxichen5
closed
7 years ago
3
Error in plot.window(...) : need finite 'ylim' values
#51
elcansaito
closed
7 years ago
2
Update manhattan.R
#50
GeneticResources
closed
7 years ago
3
Warning: plot with P-values off by a factor of ~10
#49
mrmousel
closed
7 years ago
3
Manhattan plot of a subset of markers returns wrong bp positions
#48
manuramon
closed
6 years ago
1
Feature Request: Annotate SNPs Set Font Size
#47
ParsaAkbari
closed
7 years ago
1
suggestive and genome wide lines
#46
mcoignet
closed
7 years ago
5
heatmap
#45
mcoignet
closed
8 years ago
1
highlighting issues
#44
mcoignet
closed
8 years ago
1
Bars or Lines instead of dots
#43
Spendlove
closed
8 years ago
1
Adding blank gaps between chromosomes to manhattan
#42
vsvinti
closed
6 years ago
0
Gaps between Chromosomes
#41
BOUDHRIOUA
closed
8 years ago
1
Highlighting SNP using position instead of SNP characters.
#40
NikoLichi
closed
8 years ago
2
Manhattan plot with many scaffold numbers
#39
chung154
closed
8 years ago
2
Highlight multiple different vectors and colour them differently?
#38
evad80
closed
7 years ago
5
using multiple colours to highlight SNPs
#37
EllaBowles
closed
8 years ago
1
Draw a vertical line on GWAS plot
#36
ubs717
closed
8 years ago
1
Allow character values for chromosomes
#35
stephenturner
closed
6 years ago
2
Error in plot.window(...) : need finite 'ylim' values
#34
Adisha05
closed
8 years ago
11
Label snps feature request
#33
bbanbury
closed
6 years ago
2
About return value
#32
zjf19870628
closed
6 years ago
3
add gene names to manhattan?
#31
kippakers
closed
9 years ago
1
how change Y axis
#30
Amirak18
closed
6 years ago
1
qq accepts data.frame and supports highlighting
#29
cth
closed
9 years ago
1
adding background color
#28
ckanag
closed
9 years ago
1
fix bug for axis location with missing chromosomes.
#27
Liubuntu
closed
9 years ago
1
subsetting to chromosome for the plot isn't working right
#26
ehscholl
closed
9 years ago
1
Error in axis (1, at=ticks)
#25
bdvelie
closed
6 years ago
7
qq function: probability plot not quantile-quantile plot
#24
sathishksrinivasan
closed
9 years ago
1
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