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stjude-rust-labs
/
fq
Command line utility for manipulating Illumina-generated FASTQ files.
MIT License
77
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5
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fq lint output
#39
darked89
opened
3 months ago
2
glibc for ubuntu2004 ?
#38
colindaven
closed
4 months ago
2
JSON Metrics output
#37
apeltzer
opened
9 months ago
0
`fq lint` fails on large files
#36
bounlu
opened
9 months ago
3
Reference genome support for fastq generation
#35
drkennetz
opened
9 months ago
2
`NamesValidator` issue
#34
bounlu
closed
11 months ago
3
Missing newlines are not caught
#33
KuechlerO
opened
1 year ago
3
Minor Change in fq lint README
#32
SaimMomin12
closed
1 year ago
1
commands/filter: Support multiple segments
#31
zaeleus
closed
1 year ago
0
commands/filter: Apply filter rule to multiple segments
#30
zaeleus
closed
1 year ago
1
commands/filter: Add filter by sequence pattern
#29
zaeleus
closed
1 year ago
1
Docs typo
#28
rorynolan
closed
1 year ago
1
Feature request: Filtering based on reads
#27
rorynolan
closed
1 year ago
1
FASTQ to (unaligned) BAM/SAM/CRAM
#26
Midnighter
closed
2 years ago
3
chore: updates license to match the LICENSE.txt
#25
claymcleod
closed
2 years ago
0
Github Action script added for building Docker image and pushing it Dockerhub
#24
matmu
closed
2 years ago
1
Subsampling paired, compressed reads seems problematic
#23
Midnighter
closed
2 years ago
1
Subsample to a fixed number of reads
#22
Midnighter
closed
2 years ago
9
Install on mac not working with 2021 editioning
#21
rorynolan
closed
2 years ago
4
Version reporting not working
#20
rorynolan
closed
3 years ago
5
docker: Update to rust 1.37.0
#19
zaeleus
closed
5 years ago
0
generator: Update to rand 0.7.0
#18
zaeleus
closed
5 years ago
1
docker: Add Dockerfile
#17
zaeleus
closed
5 years ago
0
Fix reading gzip streams
#16
zaeleus
closed
6 years ago
1
Link to zlib in the setup Extension
#15
zaeleus
closed
6 years ago
0
Makefile: Use relative paths rather than expanding to absolute paths
#14
zaeleus
closed
6 years ago
2
Avoid nuking the root directory when running `make clean`
#13
zaeleus
closed
6 years ago
1
Use string_view instead of char*
#12
claymcleod
closed
6 years ago
2
Changed implementation of FastQRead to use char*. This allows for eff…
#11
claymcleod
closed
6 years ago
0
Feature/further cython improvements
#10
claymcleod
closed
6 years ago
0
__exit__ takes 4 arguments
#9
adamdingliang
closed
6 years ago
2
Read name should exclude or ignore "the member of a pair"
#8
adamdingliang
closed
6 years ago
3
Use abc for abstract classes
#7
adamdingliang
closed
6 years ago
1
generate profiling data
#6
davisem
closed
6 years ago
3
Enhance Cython performance by removing PyObject marshalling.
#5
claymcleod
closed
6 years ago
1
Implement BloomFilter duplicate read name validator.
#4
claymcleod
closed
6 years ago
3
Add GZIP Support
#3
claymcleod
closed
6 years ago
0
ModuleNotFoundError
#2
davisem
closed
6 years ago
4
ImportError
#1
davisem
closed
6 years ago
0