stschiff msmc-tools issues

stschiff / msmc-tools

Tools and Utilities for msmc and msmc2

46 stars 17 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

To put together the input file

#56 vlnaraujo opened 11 months ago
3
Sudden expansion and contraction of a population

#55 jaurbanChicago opened 1 year ago
1
Added possibility to ignore unphasing.

#54 jydu closed 1 year ago
1
Concerns regarding using MSMC2 with unequal haplotype counts between populations

#53 Luker121 closed 1 year ago
2
generate_multihetsep.py

#52 yangwukaidi closed 1 year ago
6
Comiling getStats.d

#51 merondun closed 1 year ago
0
Two subspecies populations don't coalesce further back in the past

#50 kaede0e opened 1 year ago
2
the command line can not be run with "nohup"

#49 cnxiaobo94 opened 1 year ago
1
generating multihetsep.txt files for whole genomes - multiple chromosomes

#48 killidude opened 1 year ago
1
Is it necessary to analyse all eight haplotypes

#47 jiangzy26 opened 2 years ago
1
Change in time segments with masking

#46 EEPuckett opened 2 years ago
3
AssertionError while using generate_multihetsep.py

#45 Luker121 opened 2 years ago
1
Add demes tutorial

#44 stschiff closed 2 years ago
0
Phase data using BEAGLE

#43 jiangzy26 closed 2 years ago
1
Mappability mask files link is broken

#42 imdanique closed 2 years ago
1
error in bamCaller.py

#41 YueqiTao closed 2 years ago
1
Should the individual mask bed be a subset of Mappability mask ?

#40 sandyplus opened 3 years ago
1
inconsistencies in population size showing in the latest tutorial

#39 biozzq opened 3 years ago
1
error in msmc2 tutorial

#38 sandyplus closed 3 years ago
3
relative cross-coalescence rate is more than 1

#37 lwlive closed 3 years ago
1
Tutorial data link is dead

#36 masaomi closed 3 years ago
2
Alterations for bcftools mpileup

#35 Matthew-Holding closed 3 years ago
1
Tutorial input file link is broken

#34 ejquinlan closed 3 years ago
2
Error when running ./generate_multihetsep.py

#33 barlavi1 closed 3 years ago
1
Error in tutorial: Estimating population separation history

#32 alta7499 closed 4 years ago
2
Got "IndexError: list index out of range" in generate_multihetsep.py

#31 ymatmt opened 4 years ago
12
Phasing Format

#30 GabrieleNocchi closed 3 years ago
2
error in makeMappabilityMask.py

#29 rillaxy closed 3 years ago
4
vcfAllSiteParser.py

#28 mano1988 closed 5 years ago
0
Consider haploid SNPs as unphased.

#27 jydu closed 5 years ago
1
Generate the input file of msmc

#26 panruiqing closed 5 years ago
1
Workflow guideline and plotting the results

#25 zillurbmb51 closed 5 years ago
1
Issue with generate_multihetsep.py

#24 angelesdecara closed 5 years ago
1
Problem loading page for mappability masks

#23 mmaalvarez closed 4 years ago
4
Is the relatedness/inbreeding will affect the MSMC results

#22 yongzhiyang2012 closed 6 years ago
5
The m parameter (mutant rate)

#21 hugang123 closed 5 years ago
1
Huge

#20 hugang123 closed 6 years ago
1
mappability mask ?

#19 yuntwang closed 5 years ago
1
Can we use multi sample vcf and then split it as per chromosome and individual

#18 anubhabkhan closed 5 years ago
3
Update generate_multihetsep.py

#17 starskyzheng closed 6 years ago
0
Update generate_multihetsep.py

#16 starskyzheng closed 6 years ago
0
Complete Genomics format

#15 PattSS closed 5 years ago
1
generate the mappability mask

#14 houzhe1991 closed 5 years ago
1
cgCaller.py problem

#13 houzhe1991 closed 5 years ago
1
mask behavior

#12 stsmall closed 5 years ago
1
The vcfAllSiteParser.py does not work

#11 liuqpzafu closed 5 years ago
4
how to get standard output of generate_multihetsep.py

#10 Jacky-Chein closed 5 years ago
1
bamCaller.py problem

#9 llq0325 closed 5 years ago
4
Update makeMappabilityMask.py

#8 weissman closed 8 years ago
0
Error on generate_multihetsep.py

#7 MaoYafei closed 5 years ago
5