tacitvenom genomics_algo issues

tacitvenom / genomics_algo

MIT License

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Allow levenshtein_distance to be senstitive to different interchanging bases

#38 tacitvenom opened 3 years ago
0
Contribution/issue21

#37 SvoONs closed 3 years ago
5
Get the first occurence for consecutive clumps in ori finder

#36 tacitvenom opened 3 years ago
0
Contribution guidelines: dev environment setup

#35 tacitvenom opened 3 years ago
0
Setup dockerfile

#34 tacitvenom opened 3 years ago
0
Setup proper makefile

#33 tacitvenom opened 3 years ago
0
Implement global/local alignment backtrace

#32 tacitvenom closed 3 years ago
1
Implement local aligment

#31 tacitvenom opened 3 years ago
0
Implement global aligment

#30 tacitvenom opened 3 years ago
0
Make docstrings consistent

#29 tacitvenom opened 3 years ago
0
Use FM indexing for building a genome index

#28 tacitvenom opened 3 years ago
0
Build genome indexing

#27 tacitvenom opened 3 years ago
0
Implement approximate matching with pigeon hole principle

#26 tacitvenom opened 3 years ago
0
implement Levenshtein distance

#25 tacitvenom closed 3 years ago
0
test_find_pattern_clumps_with_genome results have changed

#24 tacitvenom closed 3 years ago
1
Check the value in test for e_coli clump from CI

#23 tacitvenom closed 3 years ago
2
Frequent Words with Mismatches and Reverse Complements

#22 tacitvenom opened 3 years ago
0
Frequent Words with Mismatches

#21 tacitvenom closed 3 years ago
3
Optimise finding clumps algorithm (Fixes #15) (Sourcery refactored)

#20 sourcery-ai[bot] closed 3 years ago
1
Optimise finding clumps algorithm (Fixes #15) (Sourcery refactored)

#19 sourcery-ai[bot] closed 3 years ago
1
Optimise finding clumps algorithm (Fixes #15)

#18 tacitvenom closed 3 years ago
2
Add support for Gitpod/repl.it

#17 tacitvenom closed 3 years ago
0
Implement Approximate Matching

#16 tacitvenom opened 3 years ago
1
Optimize find_pattern_clumps function

#15 tacitvenom opened 4 years ago
2
Optimize bad character rule lookup

#14 tacitvenom opened 4 years ago
0
Setup PyPi + include in CI

#13 tacitvenom opened 4 years ago
0
Add Sphinx setup

#12 tacitvenom opened 4 years ago
0
Add contribution guidelines

#11 tacitvenom closed 3 years ago
1
Check other CI options

#10 tacitvenom opened 4 years ago
0
boyer moore's with lookup

#9 tacitvenom opened 4 years ago
1
setup reqs.txt

#8 tacitvenom closed 3 years ago
1
move tests to doctest

#7 tacitvenom closed 4 years ago
0
setup precommit

#6 tacitvenom closed 4 years ago
0
set up ci

#5 tacitvenom closed 4 years ago
1
ori finder - finding clumps

#4 tacitvenom closed 4 years ago
0
find most frequent patterns for length t

#3 tacitvenom closed 4 years ago
1
implement lookups for boyer moore's

#2 tacitvenom closed 4 years ago
0
Sourcery refactored main branch

#1 sourcery-ai[bot] closed 4 years ago
1