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tacitvenom
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genomics_algo
MIT License
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Allow levenshtein_distance to be senstitive to different interchanging bases
#38
tacitvenom
opened
3 years ago
0
Contribution/issue21
#37
SvoONs
closed
3 years ago
5
Get the first occurence for consecutive clumps in ori finder
#36
tacitvenom
opened
3 years ago
0
Contribution guidelines: dev environment setup
#35
tacitvenom
opened
3 years ago
0
Setup dockerfile
#34
tacitvenom
opened
3 years ago
0
Setup proper makefile
#33
tacitvenom
opened
3 years ago
0
Implement global/local alignment backtrace
#32
tacitvenom
closed
3 years ago
1
Implement local aligment
#31
tacitvenom
opened
3 years ago
0
Implement global aligment
#30
tacitvenom
opened
3 years ago
0
Make docstrings consistent
#29
tacitvenom
opened
3 years ago
0
Use FM indexing for building a genome index
#28
tacitvenom
opened
3 years ago
0
Build genome indexing
#27
tacitvenom
opened
3 years ago
0
Implement approximate matching with pigeon hole principle
#26
tacitvenom
opened
3 years ago
0
implement Levenshtein distance
#25
tacitvenom
closed
3 years ago
0
test_find_pattern_clumps_with_genome results have changed
#24
tacitvenom
closed
3 years ago
1
Check the value in test for e_coli clump from CI
#23
tacitvenom
closed
3 years ago
2
Frequent Words with Mismatches and Reverse Complements
#22
tacitvenom
opened
3 years ago
0
Frequent Words with Mismatches
#21
tacitvenom
closed
3 years ago
3
Optimise finding clumps algorithm (Fixes #15) (Sourcery refactored)
#20
sourcery-ai[bot]
closed
3 years ago
1
Optimise finding clumps algorithm (Fixes #15) (Sourcery refactored)
#19
sourcery-ai[bot]
closed
3 years ago
1
Optimise finding clumps algorithm (Fixes #15)
#18
tacitvenom
closed
3 years ago
2
Add support for Gitpod/repl.it
#17
tacitvenom
closed
3 years ago
0
Implement Approximate Matching
#16
tacitvenom
opened
3 years ago
1
Optimize find_pattern_clumps function
#15
tacitvenom
opened
3 years ago
2
Optimize bad character rule lookup
#14
tacitvenom
opened
3 years ago
0
Setup PyPi + include in CI
#13
tacitvenom
opened
3 years ago
0
Add Sphinx setup
#12
tacitvenom
opened
3 years ago
0
Add contribution guidelines
#11
tacitvenom
closed
3 years ago
1
Check other CI options
#10
tacitvenom
opened
3 years ago
0
boyer moore's with lookup
#9
tacitvenom
opened
3 years ago
1
setup reqs.txt
#8
tacitvenom
closed
3 years ago
1
move tests to doctest
#7
tacitvenom
closed
3 years ago
0
setup precommit
#6
tacitvenom
closed
3 years ago
0
set up ci
#5
tacitvenom
closed
3 years ago
1
ori finder - finding clumps
#4
tacitvenom
closed
3 years ago
0
find most frequent patterns for length t
#3
tacitvenom
closed
3 years ago
1
implement lookups for boyer moore's
#2
tacitvenom
closed
3 years ago
0
Sourcery refactored main branch
#1
sourcery-ai[bot]
closed
3 years ago
1