tapios risk-networks issues

tapios / risk-networks

Code for risk networks: a blend of compartmental models, graphs, data assimilation and semi-supervised learning

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revisions 2

#200 odunbar closed 2 years ago
0
add license agreements

#199 odunbar closed 2 years ago
0
changed params

#198 odunbar closed 2 years ago
0
Sequential batch localization

#197 odunbar closed 3 years ago
1
WIP: Iterated forward DA as a smoother

#196 odunbar closed 3 years ago
0
WIP: DA updates of the whole state vector

#195 dburov190 opened 3 years ago
0
Potential bug: no health workers in user_graph

#194 dburov190 opened 3 years ago
0
Investigate further sorting of the nodes in user base case

#193 dburov190 opened 3 years ago
0
Is ordering within a batch required?

#192 odunbar opened 3 years ago
0
merge latest changes from master

#191 jinlong83 closed 3 years ago
0
10^5 network setup

#190 odunbar closed 3 years ago
1
learning parameters with latest codes

#189 jinlong83 closed 3 years ago
2
Fix ray memory & temp_dir issues

#188 dburov190 closed 3 years ago
0
added script for intervention parallel

#187 odunbar closed 3 years ago
0
Drawing initial condition from beta distribution

#186 jinlong83 closed 3 years ago
0
Implement DA with 'neighbor', 'global' updates

#185 dburov190 closed 3 years ago
0
Shared memory & improved parallelism

#184 dburov190 closed 3 years ago
2
Improve reproducibility with explicit seeds where possible

#183 dburov190 closed 3 years ago
3
Implement saving & loading of epidemic data

#182 dburov190 closed 3 years ago
2
Observation fraction vs budget

#181 odunbar opened 3 years ago
0
WIP: learning parameters

#180 jinlong83 closed 3 years ago
3
Add third assimilator, and name cleanup for expts

#179 odunbar closed 3 years ago
5
WIP: Minor updates of DA and parallel master equation

#178 jinlong83 closed 3 years ago
0
Fix 'assimilate_HD_now' bug

#177 dburov190 closed 3 years ago
1
Intervention example

#176 odunbar closed 3 years ago
0
Dynamic neighbour observation

#175 odunbar opened 3 years ago
0
New observations

#174 odunbar closed 3 years ago
0
Split DataAssimilator's responsibilities into two classes

#173 dburov190 opened 3 years ago
0
Speed up assmilation-loop code by ~27% & fix couple minor bugs

#172 dburov190 closed 3 years ago
1
Fix "master states storing" & "assimilation times" inconsistencies

#171 dburov190 closed 3 years ago
8
Logfiles.

#170 odunbar opened 3 years ago
0
Batching Nodally defined model parameters

#169 odunbar opened 3 years ago
0
Added batches for EAKF

#168 odunbar closed 3 years ago
0
Expt: choose Classifier thresholds for Infectious test , [Also fixes prevalence calculation]

#167 odunbar closed 3 years ago
1
WIP: Multiprocessing implementation for master equation

#166 jinlong83 closed 3 years ago
0
TruePositiveRates/TrueNegativeRates and ROC plotting

#165 odunbar closed 3 years ago
0
WIP: reduce the memory use of EAKF for large networks

#164 jinlong83 closed 3 years ago
5
Orad/scipy int

#163 odunbar closed 3 years ago
0
added scipy solver back into risk_simulator

#162 odunbar closed 3 years ago
1
Implement slices and 'from_samplers' in TransitionRates

#161 dburov190 closed 4 years ago
5
Further EAKF speedup - avoiding the second full SVD

#160 odunbar closed 3 years ago
2
Updates of EAKF codes to improve efficiency

#159 jinlong83 closed 4 years ago
5
final paper examples

#158 lubo93 opened 4 years ago
0
Implement EnsembleTimeSeries for storage of states, parameters etc.

#157 dburov190 closed 4 years ago
4
Orad/save observations

#156 odunbar closed 4 years ago
1
added dictionaries to save observed states,means,variances by time

#155 odunbar closed 4 years ago
0
Restrict DA of model parameter to only nodes of interest

#154 odunbar closed 4 years ago
0
Added modifiers to `TransitionRates`

#153 odunbar closed 4 years ago
0
Implement 'verbose' flags for EpidemicSimulator, HealthService & DataAssimilator

#152 dburov190 closed 4 years ago
0
Understand what happens with filtering of edges in epidemic simulator

#151 dburov190 opened 4 years ago
1