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risk-networks
Code for risk networks: a blend of compartmental models, graphs, data assimilation and semi-supervised learning
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clipping
#150
odunbar
closed
4 years ago
0
Inherit attributes & update user_network from contact_network
#149
dburov190
closed
4 years ago
0
GammaSampler.minimum is accounted for twice in TransitionRates
#148
dburov190
closed
4 years ago
0
Remove age group assignment from ContactNetwork
#147
dburov190
opened
4 years ago
2
Health service example
#146
odunbar
opened
4 years ago
0
Refactor TransitionRates
#145
dburov190
opened
4 years ago
0
Move diagram generation, transition rates setting etc. to KineticModel
#144
dburov190
opened
4 years ago
0
Set lambdas (contact rates, inception rates) only once, on contact network
#143
dburov190
opened
4 years ago
0
Saving epidemic data in files
#142
odunbar
opened
4 years ago
0
Consistent time loop
#141
odunbar
opened
4 years ago
0
Make sure distributions used for ensemble rates agree with Overleaf
#140
dburov190
opened
4 years ago
0
Orad/add plots
#139
odunbar
closed
4 years ago
0
re-add epidemic_data_plot
#138
odunbar
closed
4 years ago
0
High Variance Observations
#137
odunbar
closed
4 years ago
0
Implement ContactNetwork and refactor accordingly
#136
dburov190
closed
4 years ago
9
Pass model parameters into EAKF as a combined numpy array,
#135
odunbar
opened
4 years ago
0
updated some codes of solvers for DA examples.
#134
jinlong83
closed
4 years ago
0
Requisites for paper-examples
#133
odunbar
closed
4 years ago
2
perfect + imperfect observation on same node.
#132
odunbar
closed
4 years ago
0
Accuracy experiment with data assimilation for paper results
#131
odunbar
closed
4 years ago
5
Observation class based on ensemble variance
#130
odunbar
closed
4 years ago
0
DataObservation requires contact_network
#129
odunbar
closed
4 years ago
0
WIP: Exogenous rates
#128
odunbar
closed
3 years ago
0
health worker age distribution fix
#127
lubo93
closed
4 years ago
2
Hospital beds in node_identifier_helper.py
#126
lubo93
closed
4 years ago
4
resolving several issues
#125
odunbar
closed
4 years ago
4
Use n_steps + 1 instead of len(t)
#124
dburov190
closed
4 years ago
2
Refactor flatten in MasterEquationsModelEnsemble "simulate" and "simulate_backwards"
#123
dburov190
closed
4 years ago
1
Create a new TransitionRates object from nodal clinical parameters.
#122
odunbar
closed
4 years ago
0
Create a model performance tracking system
#121
agarbuno
closed
4 years ago
0
deleted simulation investigation
#120
lubo93
closed
4 years ago
0
Move `examples/paper` to `/paper`
#119
glwagner
opened
4 years ago
2
Is simulation_investigation.py used?
#118
dburov190
closed
4 years ago
1
Delete sample_distribution and change examples that use it
#117
dburov190
closed
4 years ago
3
Ambiguous bitwise 'and' used in StateInformedObservation.find_observation_states
#116
dburov190
closed
4 years ago
0
Ambiguous length computed in DataAssimilator.sum_to_one
#115
dburov190
closed
4 years ago
2
observe takes noisy_measurement as an argument but never uses it
#114
dburov190
closed
4 years ago
3
find_observation_states takes contact_network as an argument but never uses it
#113
dburov190
opened
4 years ago
3
mean_contact_duration in ContactSimulator is not implemented
#112
dburov190
opened
4 years ago
1
Delete non-reduced system code
#111
dburov190
closed
4 years ago
1
Epidemic Data Storage with example
#110
odunbar
closed
4 years ago
8
Interventions
#109
dburov190
closed
4 years ago
1
binomial health service degree distribution
#108
lubo93
closed
4 years ago
1
Assimilate negative information of hospital & death records
#107
odunbar
closed
4 years ago
1
Extend capability of EpidemicSimulator for simulations on static networks
#106
glwagner
opened
4 years ago
0
simulate_idealized_NYC_epidemic.py does not run
#105
glwagner
closed
4 years ago
1
'do_step_full' fails in master equations ensemble
#104
dburov190
closed
4 years ago
2
Identifying master equations and kinetic model
#103
odunbar
closed
4 years ago
1
Master Equation and Kinetic model inconsistent with same parameters
#102
odunbar
opened
4 years ago
5
removes outdated observations classes (use measurements instead)
#101
odunbar
closed
4 years ago
0
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