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tapios
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risk-networks
Code for risk networks: a blend of compartmental models, graphs, data assimilation and semi-supervised learning
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revisions 2
#200
odunbar
closed
2 years ago
0
add license agreements
#199
odunbar
closed
2 years ago
0
changed params
#198
odunbar
closed
2 years ago
0
Sequential batch localization
#197
odunbar
closed
3 years ago
1
WIP: Iterated forward DA as a smoother
#196
odunbar
closed
3 years ago
0
WIP: DA updates of the whole state vector
#195
dburov190
opened
3 years ago
0
Potential bug: no health workers in user_graph
#194
dburov190
opened
3 years ago
0
Investigate further sorting of the nodes in user base case
#193
dburov190
opened
3 years ago
0
Is ordering within a batch required?
#192
odunbar
opened
3 years ago
0
merge latest changes from master
#191
jinlong83
closed
3 years ago
0
10^5 network setup
#190
odunbar
closed
3 years ago
1
learning parameters with latest codes
#189
jinlong83
closed
3 years ago
2
Fix ray memory & temp_dir issues
#188
dburov190
closed
3 years ago
0
added script for intervention parallel
#187
odunbar
closed
3 years ago
0
Drawing initial condition from beta distribution
#186
jinlong83
closed
4 years ago
0
Implement DA with 'neighbor', 'global' updates
#185
dburov190
closed
3 years ago
0
Shared memory & improved parallelism
#184
dburov190
closed
4 years ago
2
Improve reproducibility with explicit seeds where possible
#183
dburov190
closed
4 years ago
3
Implement saving & loading of epidemic data
#182
dburov190
closed
4 years ago
2
Observation fraction vs budget
#181
odunbar
opened
4 years ago
0
WIP: learning parameters
#180
jinlong83
closed
3 years ago
3
Add third assimilator, and name cleanup for expts
#179
odunbar
closed
4 years ago
5
WIP: Minor updates of DA and parallel master equation
#178
jinlong83
closed
4 years ago
0
Fix 'assimilate_HD_now' bug
#177
dburov190
closed
4 years ago
1
Intervention example
#176
odunbar
closed
4 years ago
0
Dynamic neighbour observation
#175
odunbar
opened
4 years ago
0
New observations
#174
odunbar
closed
4 years ago
0
Split DataAssimilator's responsibilities into two classes
#173
dburov190
opened
4 years ago
0
Speed up assmilation-loop code by ~27% & fix couple minor bugs
#172
dburov190
closed
4 years ago
1
Fix "master states storing" & "assimilation times" inconsistencies
#171
dburov190
closed
4 years ago
8
Logfiles.
#170
odunbar
opened
4 years ago
0
Batching Nodally defined model parameters
#169
odunbar
opened
4 years ago
0
Added batches for EAKF
#168
odunbar
closed
4 years ago
0
Expt: choose Classifier thresholds for Infectious test , [Also fixes prevalence calculation]
#167
odunbar
closed
4 years ago
1
WIP: Multiprocessing implementation for master equation
#166
jinlong83
closed
4 years ago
0
TruePositiveRates/TrueNegativeRates and ROC plotting
#165
odunbar
closed
4 years ago
0
WIP: reduce the memory use of EAKF for large networks
#164
jinlong83
closed
4 years ago
5
Orad/scipy int
#163
odunbar
closed
4 years ago
0
added scipy solver back into risk_simulator
#162
odunbar
closed
4 years ago
1
Implement slices and 'from_samplers' in TransitionRates
#161
dburov190
closed
4 years ago
5
Further EAKF speedup - avoiding the second full SVD
#160
odunbar
closed
4 years ago
2
Updates of EAKF codes to improve efficiency
#159
jinlong83
closed
4 years ago
5
final paper examples
#158
lubo93
opened
4 years ago
0
Implement EnsembleTimeSeries for storage of states, parameters etc.
#157
dburov190
closed
4 years ago
4
Orad/save observations
#156
odunbar
closed
4 years ago
1
added dictionaries to save observed states,means,variances by time
#155
odunbar
closed
4 years ago
0
Restrict DA of model parameter to only nodes of interest
#154
odunbar
closed
4 years ago
0
Added modifiers to `TransitionRates`
#153
odunbar
closed
4 years ago
0
Implement 'verbose' flags for EpidemicSimulator, HealthService & DataAssimilator
#152
dburov190
closed
4 years ago
0
Understand what happens with filtering of edges in epidemic simulator
#151
dburov190
opened
4 years ago
1
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