thegenemyers DAZZ_DB issues

thegenemyers / DAZZ_DB

The Dazzler Data Base

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issues

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ONElib.c: fully declare vasprintf.

#44 emollier opened 6 months ago
0
Forbidden usage of `exit` in `INTERACTIVE` mode

#43 a-ludi closed 3 years ago
1
installation error

#42 onkarnath89 opened 3 years ago
2
Invalid read, DBstats crashes with glibc 2.32

#41 rbalint opened 4 years ago
2
fasta2DB still gives an error message when using ccs data

#40 bernardo1963 closed 5 years ago
1
Bug fix in fasta2* with very large reads (> 2Gb)

#39 a-ludi opened 5 years ago
2
Bugfix in simulator: unjustified "Genome length is less than shortest read length !"

#38 a-ludi opened 5 years ago
1
dependency on pacbio headers in fasta2DB

#37 aclum closed 5 years ago
1
Fix infinite loop on empty stdin

#36 a-ludi closed 6 years ago
3
Add note about version numbers, use v1.0.yyyymmdd

#35 peterjc opened 6 years ago
0
New version tag(s) since v1.0

#34 peterjc closed 5 years ago
14
Warnings

#33 pb-cdunn closed 6 years ago
0
Another uninitialized variable -- not a big deal

#32 pb-cdunn closed 6 years ago
1
add option to DB2fasta to output to stdout

#31 mcshane closed 6 years ago
1
Fastq support

#30 mictadlo closed 6 years ago
3
creating a new or using the same DB for multiple SMRT cells

#29 mictadlo closed 7 years ago
2
DB2fasta warning

#28 ebioman closed 7 years ago
3
Random Access of DAZZ_DB causes long I/O wait

#27 pb-cdunn closed 7 years ago
2
Honor standard compiler flags by using standard rules for C sources

#26 0xaf1f opened 7 years ago
0
Catrack fails to compile

#25 gt1 closed 7 years ago
1
Fix a typo in Catrack.c

#24 druvus closed 6 years ago
0
infinite loop

#23 pb-cdunn closed 8 years ago
3
map to 4 (N) by default instead of only mapping N to 4 (and other ambiguity codes to 0, i.e. A)

#22 gt1 closed 8 years ago
7
`fasta2DB -i` does something strange

#21 pb-cdunn closed 8 years ago
3
Non-interactive DBsplit

#20 pb-cdunn closed 8 years ago
2
warnings

#19 pb-cdunn closed 8 years ago
2
fasta2DB does too much

#18 pb-cdunn closed 8 years ago
5
Update simulator

#17 pb-cdunn closed 6 years ago
0
issues with large -s not reported in log files

#16 aclum closed 8 years ago
2
Suggestions for simulator.c

#15 pb-cdunn closed 8 years ago
4
Minor warning

#14 pb-cdunn closed 8 years ago
10
Divide-by-zero from `DBstats -mdust`

#13 pb-cdunn closed 8 years ago
4
Fix divide-by-zero

#12 pb-cdunn closed 8 years ago
6
Fix broken database field, add status messages

#11 mschatz closed 8 years ago
2
Pacbio header line name inconsistent

#10 sjackman closed 8 years ago
3
Read FASTQ files

#9 sjackman closed 8 years ago
1
Warnings

#8 pb-cdunn closed 9 years ago
1
Read too long

#7 yasirs closed 9 years ago
4
Closing wrong file in Catrack when existing data file

#6 cancan101 closed 9 years ago
2
Pacbio header line name inconsisten

#5 homologus closed 9 years ago
4
fasta2DB: Skip subreads with ranges greater than 2^16

#4 pbjd closed 10 years ago
2
DBDust - Segmentation fault

#3 fbemm closed 9 years ago
3
Remark: minor error in example

#2 ebioman closed 10 years ago
1
compilation error in DB module

#1 MichelMoser closed 10 years ago
3