theislab dca issues - Githubissues

theislab / dca

Deep count autoencoder for denoising scRNA-seq data

Apache License 2.0

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issues

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Application to sc epigenetic data

#71 ejc043 opened 4 weeks ago
0
Updates to work with TF 2.4. Added Docker Image

#70 rahul-ohlan closed 7 months ago
1
a question

#69 11051911 opened 1 year ago
1
tensorflow.python.framework.errors_impl

#68 htvh opened 1 year ago
0
scanpy.external.pp.dca results still need normolize,scale,and log1p ?

#67 rdf1993 opened 1 year ago
0
Messed up dca installation

#66 Rohit-Satyam opened 1 year ago
1
Download time out

#65 WenzhuoTang opened 1 year ago
0
Ambiguous code . I hardly can understand the logic in the aspect of code

#64 IwGrin opened 1 year ago
0
pi.tsv is missing

#63 wanlinjuan opened 1 year ago
0
Denoising scRNA-seq using DCA can not work

#62 peibana opened 1 year ago
0
DCA vs scVI

#61 HuynhNPT opened 1 year ago
0
package versions

#60 bxxu opened 1 year ago
0
Bump tensorflow requirement to <=2.10

#59 scottgigante-immunai opened 1 year ago
2
dca îs not a package

#58 dr-sayyadhury opened 1 year ago
0
small error

#57 crawlerWPS closed 2 years ago
0
pytorch version

#56 GlancerZ opened 2 years ago
0
Which keras version to use?

#55 Nayrouz109 opened 2 years ago
2
TypeError: load() missing 1 required positional argument: 'Loader'

#54 sruthisrini closed 1 year ago
1
Mode 'full' does not return the correct latent representation

#53 valentinwust closed 2 years ago
1
Some questions about DCA implementation

#52 HelloWorldLTY closed 2 years ago
2
I found that the tutorial page is broken

#51 HelloWorldLTY opened 2 years ago
0
-- hyper (no output/empty output)

#50 LouiLouis opened 2 years ago
0
after use --nocheckcounts, An error occurs : numpy() is only available when eager execution is enabled.

#49 ScarletChieftain opened 2 years ago
0
pip install : ModuleNotFoundError: No module named 'keras.objectives'

#48 AlexCalderwood closed 3 years ago
6
conda install failure

#47 zhqu1148980644 opened 3 years ago
1
Switch to TF2-keras optimizers

#45 gokceneraslan closed 2 years ago
0
DCA optimizer KeyError

#46 marcglettig closed 3 years ago
11
Use count data as input but encounter assertion error

#44 elviswong1013 closed 3 years ago
1
why KeyError: 'rmsprop'?

#43 ocean-debug closed 3 years ago
1
ImportError: cannot import name 'stacked_violin'

#42 chenziyi closed 3 years ago
3
Not compatible with Tensorflow v2+

#41 ersinpw closed 3 years ago
1
Not compatible with Tensorflow v2+

#40 ersinpw closed 3 years ago
0
Not compatible with Tensorflow v2+

#39 ersinpw closed 3 years ago
0
Dependency on deprecated tensorflow function

#38 Yolanda-HT closed 3 years ago
1
Value error while running dca with scanpy

#37 Yolanda-HT closed 3 years ago
0
Version of Pandas

#36 gprashant17 closed 4 years ago
0
smaller expression value after imputation?

#35 chansigit opened 4 years ago
0
denoisesubset option error

#34 EliseAld opened 4 years ago
0
Tensorflow version?

#33 alexQiSong closed 3 years ago
7
conda installation error

#32 cjhong opened 4 years ago
1
there is a term tf.lgamma(y_true+1.0) in the NB loss function. Is it from NB pdf?

#31 jhu99 closed 5 years ago
1
no 'mean_norm.tsv' created

#30 royoelen opened 5 years ago
1
Unable to run dca with mode='denoise'. 'ValueError: setting an array element with a sequence.'

#29 shuyizzz opened 5 years ago
2
input and output dimensions

#28 xikanfeng2 opened 5 years ago
0
Make the learning rate accessible from the API.

#27 gamazeps closed 5 years ago
1
pre trained model

#26 fedeago opened 5 years ago
0
cannot recognize fluidigm RNA-seq raw counts

#25 Winnie09 closed 3 years ago
3
Input and Output

#24 Winnie09 opened 5 years ago
0
scale data

#23 wangjiawen2013 closed 5 years ago
3
Error in running dca

#22 nhuhoa closed 3 years ago
1