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timkahlke
/
BASTA
Basic Sequence Taxonomy Annotator
GNU General Public License v3.0
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basta not found in scripts/
#47
bioinfwithjudith
opened
4 months ago
0
Update test_download_utils.py
#46
bodington
opened
5 months ago
0
basta taxonomy problem: a loop of re-downloading - md5 sum mismatching
#45
dejsha
opened
6 months ago
1
How do I specify custom directory of database?
#44
maruiqi0710
closed
1 year ago
0
How to create custom DataBase of de novo assembly?
#43
maruiqi0710
opened
1 year ago
2
Why BASTA don't assigne with 1 hit
#42
Mcouedel
closed
1 year ago
1
Comments regarding arg parsing
#41
davised
opened
2 years ago
0
Set read mode to 'rt' for non gz files.
#40
davised
closed
2 years ago
0
Remoived filter bug
#39
tkahlke
closed
2 years ago
0
[BASTA ERROR] Couldn't find complete_taxa.db in /work/uniprot Did you run initial 'basta download'?
#38
Adamyazori
closed
2 years ago
3
Multi thread usage
#37
Fu-Yin
closed
2 years ago
2
No mappings found
#36
ceolder
closed
2 years ago
4
Which mapping file for NR database
#35
zhuxiaoyu123
closed
2 years ago
4
database creation issue for uniprot e.g. type uni
#34
shrivastavabhishek
closed
2 years ago
2
Basta2Krona output html file is empty. (help)
#33
svsuresh
closed
2 years ago
1
Modify basta2krona.py function (suggestion)
#32
svsuresh
closed
2 years ago
1
filter' object is not subscriptable
#31
Lcornet
closed
2 years ago
9
Updates on Python 3 version?
#30
bioinfoMMS
closed
3 years ago
6
how can I creat complete_taxa.db file use basta create_db?
#29
yuanpingdu
closed
3 years ago
1
error when using GTDB mapping file in create_db
#28
Jigyasa3
closed
3 years ago
10
Any perspective for BASTA python 3?
#27
EulleSA
closed
3 years ago
2
question:is mapping database necessary?
#26
genostack
closed
3 years ago
1
Conda installation error
#25
TomaszSuchan
closed
4 years ago
1
Cannot run parallel jobs
#24
Jigyasa3
closed
3 years ago
1
running Basta on already downloaded mapping file
#23
Jigyasa3
closed
3 years ago
26
UniProt database doesn't match Uniref90.fasta headers
#22
Jigyasa3
closed
5 years ago
2
BASTA sequence output
#21
arthurvinx
closed
3 years ago
2
INDEX ERROR
#20
ilyavs
closed
5 years ago
4
Warning messages for mappings not found
#19
arthurvinx
closed
3 years ago
2
multiple doesn't work
#18
timkahlke
closed
3 years ago
1
taxonomy classification of assembled genome bins
#17
chloelulu
closed
5 years ago
4
verbose file doesn't update
#16
timkahlke
closed
6 years ago
0
strip() error
#15
timkahlke
closed
6 years ago
0
fix jumping lines in output
#14
maxibor
closed
6 years ago
0
Add LCA count
#13
maxibor
closed
6 years ago
3
handling of weird hit formats
#12
maxibor
closed
6 years ago
0
Receiving: BASTA WARNING No taxon found with custom mapping file
#11
dnieuw
closed
6 years ago
1
buggy ouput
#10
thierryjanssens
closed
6 years ago
12
Installation in conda
#9
thierryjanssens
closed
6 years ago
8
Specie level not reached
#8
maxibor
closed
6 years ago
3
switch to conda
#7
maxibor
closed
6 years ago
2
Multi error
#6
timkahlke
closed
6 years ago
1
Single has no output file
#5
timkahlke
closed
6 years ago
1
create_db
#4
timkahlke
closed
6 years ago
1
No taxon found ...
#3
timkahlke
closed
6 years ago
1
create_db
#2
timkahlke
closed
6 years ago
1
Custom db
#1
timkahlke
closed
7 years ago
0