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tlambert03
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nd2
Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction
https://tlambert03.github.io/nd2
BSD 3-Clause "New" or "Revised" License
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docs: fix emoji links in docs build
#191
tlambert03
closed
10 months ago
1
Missing axis
#190
aaristov
closed
7 months ago
10
ci(pre-commit.ci): autoupdate
#189
pre-commit-ci[bot]
closed
10 months ago
2
test: fix aicsimageio test
#188
tlambert03
closed
10 months ago
2
[test-bot] pip install --pre is failing
#187
github-actions[bot]
closed
10 months ago
0
chore: minor ROI updates
#186
tlambert03
closed
11 months ago
2
[test-bot] pip install --pre is failing
#185
github-actions[bot]
closed
11 months ago
0
todo: turn color integers into tuples (or something meaningful)
#184
tlambert03
closed
6 months ago
0
fix: fix extraction of xy points in extruded shapes
#183
tlambert03
closed
11 months ago
2
Coordinates for RoiShapeType.Polygon not showing
#182
pawlowska
closed
11 months ago
3
feat: add `read_frame` and `loop_indices` to public api
#181
tlambert03
closed
11 months ago
2
ci(pre-commit.ci): autoupdate
#180
pre-commit-ci[bot]
closed
11 months ago
2
[test-bot] pip install --pre is failing
#179
github-actions[bot]
closed
11 months ago
0
refactor: make binarylayer a dataclass
#178
tlambert03
closed
11 months ago
2
[test-bot] pip install --pre is failing
#177
github-actions[bot]
closed
11 months ago
0
fix: fix key error in binary data
#176
tlambert03
closed
11 months ago
2
[test-bot] pip install --pre is failing
#175
github-actions[bot]
closed
11 months ago
0
feature: implement lazy loading for binary data
#174
tlambert03
opened
1 year ago
0
order of axes
#173
acycliq
closed
1 year ago
8
Getting ND2 series images in the order they were captured
#172
mendelfishman
closed
1 year ago
3
ci(dependabot): bump actions/checkout from 3 to 4
#171
dependabot[bot]
closed
1 year ago
1
ci(pre-commit.ci): autoupdate
#170
pre-commit-ci[bot]
closed
1 year ago
2
[test-bot] pip install --pre is failing
#169
github-actions[bot]
closed
1 year ago
0
build: support python 3.12
#168
tlambert03
closed
11 months ago
2
fix: fix Z series values in events() output, and add individual axis indices
#167
tlambert03
closed
1 year ago
2
[test-bot] pip install --pre is failing
#166
github-actions[bot]
closed
1 year ago
0
ci(pre-commit.ci): autoupdate
#165
pre-commit-ci[bot]
closed
1 year ago
2
fix: fix binary reshaping
#164
tlambert03
closed
1 year ago
2
test: bump coverage
#163
tlambert03
closed
1 year ago
1
docs: update readme
#162
tlambert03
closed
1 year ago
2
feat: accept file handles as well as paths
#161
tlambert03
closed
1 year ago
2
refactor: use common base class for legacy and modern reader, move logic from nd2file
#160
tlambert03
closed
1 year ago
2
feat: decode compressed lite variant, and read string type tags
#159
tlambert03
closed
1 year ago
2
fix: fix extra kwargs to roi info
#158
tlambert03
closed
1 year ago
1
[test-bot] pip install --pre is failing
#157
github-actions[bot]
closed
1 year ago
0
ci: test on py3.12
#156
tlambert03
closed
1 year ago
3
fix: fix frame_metadata and various metadata typing
#155
tlambert03
closed
1 year ago
2
ci(pre-commit.ci): autoupdate
#154
pre-commit-ci[bot]
closed
1 year ago
2
feat: add ome_metadata output to ome-types
#153
tlambert03
closed
1 year ago
2
ci: add codspeed benchmarks
#152
tlambert03
closed
1 year ago
2
feat: add row filtering to nd2.index, as well as binary/roi data
#151
tlambert03
closed
1 year ago
1
fix: improve roi parsing for some files
#150
tlambert03
closed
1 year ago
1
docs: adding docs
#149
tlambert03
closed
1 year ago
1
feat: support files with custom experiment loops
#148
tlambert03
closed
1 year ago
1
feat: add `python -m nd2.index` cli
#147
tlambert03
closed
1 year ago
1
ci: try dropbox
#146
tlambert03
closed
1 year ago
0
[test-bot] pip install --pre is failing
#145
github-actions[bot]
closed
1 year ago
0
feat: big update to events parsing. add .events method, deprecate recorded_date
#144
tlambert03
closed
1 year ago
1
refactor: possibly move binary parse
#143
tlambert03
closed
1 year ago
2
build: remove wurlitzer from build
#142
tlambert03
closed
1 year ago
0
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