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tlambert03
/
nd2
Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction
https://tlambert03.github.io/nd2
BSD 3-Clause "New" or "Revised" License
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refactor: cleaning up reader
#141
tlambert03
closed
1 year ago
1
[Task] Add benchmarks
#140
tlambert03
closed
1 year ago
1
feat: add more typed dicts to parsing
#139
tlambert03
closed
1 year ago
1
ci: enable Strict mypy typing
#138
tlambert03
closed
1 year ago
1
test: update rescue test
#137
tlambert03
closed
1 year ago
0
chore: adding nd2_describe script
#136
tlambert03
closed
1 year ago
0
feat: Remove sdk, use all python
#135
tlambert03
closed
1 year ago
3
ci(dependabot): bump pypa/cibuildwheel from 2.12.3 to 2.13.1
#134
dependabot[bot]
closed
1 year ago
2
ci(pre-commit.ci): autoupdate
#133
pre-commit-ci[bot]
closed
1 year ago
0
ci(dependabot): bump pypa/cibuildwheel from 2.12.3 to 2.13.0
#132
dependabot[bot]
closed
1 year ago
1
fix: Make 'periodDiff' optional in TimeLoopParams construction
#131
SeanLeRoy
closed
1 year ago
6
ci(dependabot): bump pypa/cibuildwheel from 2.12.1 to 2.12.3
#130
dependabot[bot]
closed
1 year ago
0
[test-bot] pip install --pre is failing
#129
github-actions[bot]
closed
1 year ago
0
ci(dependabot): bump pypa/cibuildwheel from 2.12.0 to 2.12.1
#128
dependabot[bot]
closed
1 year ago
0
ci(pre-commit.ci): autoupdate
#127
pre-commit-ci[bot]
closed
1 year ago
0
Package not found on conda-forge channels
#126
metalmicrobe
closed
1 year ago
4
ci(dependabot): bump pypa/cibuildwheel from 2.11.3 to 2.12.0
#125
dependabot[bot]
closed
1 year ago
0
ci(pre-commit.ci): autoupdate
#124
pre-commit-ci[bot]
closed
1 year ago
0
ci(dependabot): bump pypa/cibuildwheel from 2.11.3 to 2.11.4
#123
dependabot[bot]
closed
1 year ago
1
feat: [wip] native implementation of SDK
#122
tlambert03
closed
1 year ago
0
Difference between NETimeLoop and TimeLoop?
#121
gatoniel
closed
1 year ago
8
ci(dependabot): bump pypa/cibuildwheel from 2.11.2 to 2.11.3
#120
dependabot[bot]
closed
1 year ago
0
liblimfile.so: cannot open shared object file on CentOS
#119
joshua-gould
closed
1 year ago
3
bug: Lim_FileGetAttributes failing in certain linux environments
#118
tlambert03
closed
1 year ago
4
fix: catch exception on file open and release handle
#117
tlambert03
closed
1 year ago
6
fix: close handles on object deletion
#116
tlambert03
closed
1 year ago
0
style: use ruff linter and update pre-commit
#115
tlambert03
closed
1 year ago
0
File handle left open when an nd2 file fails to read
#114
manthey
closed
1 year ago
18
ci: [pre-commit.ci] autoupdate
#113
pre-commit-ci[bot]
closed
1 year ago
0
ci: [pre-commit.ci] autoupdate
#112
pre-commit-ci[bot]
closed
1 year ago
0
[test-bot] pip install --pre is failing
#111
github-actions[bot]
closed
1 year ago
0
please pull from main... the download script was recently updated:
#110
winston1716
closed
1 year ago
5
ci(dependabot): bump pypa/cibuildwheel from 2.11.1 to 2.11.2
#109
dependabot[bot]
closed
1 year ago
0
feat: Add `ND2File.binary_data` property - extract binary layers from file
#108
tlambert03
closed
1 year ago
0
feat: Extract recorded data
#107
tlambert03
closed
1 year ago
0
feat: support python 3.11
#106
tlambert03
closed
1 year ago
0
cannot find metadata
#105
DanBushey
closed
1 year ago
3
ci(dependabot): bump pypa/cibuildwheel from 2.10.2 to 2.11.1
#104
dependabot[bot]
closed
1 year ago
1
test data not found
#103
joshua-gould
closed
1 year ago
2
feat: add roi parsing
#102
tlambert03
closed
1 year ago
0
feat: offer full unstructured data
#101
tlambert03
closed
1 year ago
0
ci: [pre-commit.ci] autoupdate
#100
pre-commit-ci[bot]
closed
1 year ago
0
[test-bot] pip install --pre is failing
#99
github-actions[bot]
closed
1 year ago
0
ci(dependabot): bump pypa/cibuildwheel from 2.10.1 to 2.10.2
#98
dependabot[bot]
closed
1 year ago
0
ci(dependabot): bump pypa/cibuildwheel from 2.9.0 to 2.10.1
#97
dependabot[bot]
closed
2 years ago
0
fix: fix rounding error in numpy pre-release
#96
tlambert03
closed
2 years ago
0
[test-bot] pip install --pre is failing
#95
github-actions[bot]
closed
2 years ago
0
fix: fix image width with sdk reader
#94
tlambert03
closed
2 years ago
0
Add `unstructured_metadata` method, fix missing position names in experiment.
#93
tlambert03
closed
2 years ago
0
fix: better fix for images with non-normal strides
#92
tlambert03
closed
2 years ago
0
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