tlnagy Crispulator.jl issues

tlnagy / Crispulator.jl

✂️ Pooled CRISPR screen optimization tool

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issues

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Added functionalities and saving raw table

#67 fgualdr opened 8 months ago
0
Non-zero WT behavior subtly breaks guide quality model

#65 tlnagy opened 1 year ago
0
patch for doubling edge case

#64 tlnagy closed 1 year ago
0
Consolidate cells and guides

#63 tlnagy opened 1 year ago
0
Improve flexibility of screen design

#62 tlnagy opened 1 year ago
0
Fix when CI runs

#61 odow closed 1 year ago
4
add support for growth without subsampling

#60 tlnagy closed 1 year ago
1
add plausible analytics to docs

#59 tlnagy closed 1 year ago
1
TagBot trigger issue

#58 JuliaTagBot closed 1 year ago
4
Multiprocessing improvements

#57 tlnagy closed 1 year ago
1
Update for Julia 1+

#56 tlnagy closed 1 year ago
1
Info about upcoming removal of packages in the General registry

#55 KristofferC closed 5 years ago
1
Add Julia 1.0 support

#54 tlnagy closed 1 year ago
0
[WIP] Add multibin support

#53 tlnagy closed 6 years ago
1
"-Inf" values of obs_phenotype

#52 hyunhwan-jeong closed 6 years ago
5
"run.jl config" is not working

#51 hyunhwan-jeong closed 6 years ago
4
Error tagging new release

#50 attobot closed 6 years ago
0
Add an example generating count data matrix

#49 hyunhwan-jeong closed 6 years ago
2
Exporting count matrix

#48 hyunhwan-jeong closed 6 years ago
16
update calls to old variable name; fix for #46

#47 tlnagy closed 7 years ago
0
error on `exp` mode

#46 hyunhwan-jeong closed 7 years ago
1
Things remaining to do for slim crispulator

#45 tlnagy closed 8 years ago
0
Build out documentation

#44 tlnagy closed 6 years ago
1
Modularize and add integration tests

#43 tlnagy closed 1 year ago
0
Current design crashes with latest stats packages

#42 tlnagy closed 8 years ago
4
Plotting on 32-bit windows is broken

#41 tlnagy closed 8 years ago
0
Test simulation on Windows

#40 tlnagy closed 8 years ago
0
Restructure library.jl

#39 tlnagy opened 8 years ago
0
Performance of analysis code has degraded

#38 tlnagy closed 6 years ago
3
Improve terminology

#37 tlnagy closed 8 years ago
4
Add support for yaml encoded run parameters

#36 tlnagy closed 8 years ago
5
Add noise to growth assay

#35 tlnagy closed 8 years ago
0
scan_rep_space analysis is crashing on server

#34 tlnagy closed 8 years ago
2
Add analysis that generates plots for various runs

#33 tlnagy closed 8 years ago
0
Build out debug vs full runs of experiments

#32 tlnagy closed 8 years ago
0
Refactor experiments.jl

#31 tlnagy closed 8 years ago
0
Separating increasing and decreasing genes yield poor AUPRC/venn scores

#30 tlnagy closed 8 years ago
0
Specific pairwise comparisons to explore

#29 tlnagy closed 8 years ago
0
auprc computed incorrectly if first label is a true hit

#28 tlnagy closed 8 years ago
0
auroc computation checks != negative label, not == positive label

#27 tlnagy closed 8 years ago
0
auprc implementation is unnecessarily O(n^2)

#26 tlnagy closed 8 years ago
0
Add additional quality metrics

#25 tlnagy closed 8 years ago
3
Allow for multiple doublings before sampling

#24 tlnagy closed 8 years ago
3
Alternative sigmoid function

#23 tlnagy closed 8 years ago
1
Test all the things

#22 tlnagy opened 8 years ago
0
Running tests from terminal crashes due to loading full run script

#21 tlnagy closed 8 years ago
0
Unexpected behavior by decreasing genes

#20 tlnagy closed 8 years ago
4
Normalize to median of negative controls

#19 tlnagy closed 8 years ago
1
Comparing methods code is broken

#18 tlnagy closed 8 years ago
0
Refactor into package

#17 tlnagy closed 8 years ago
1