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tlnagy
/
Crispulator.jl
✂️ Pooled CRISPR screen optimization tool
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Added functionalities and saving raw table
#67
fgualdr
opened
8 months ago
0
Non-zero WT behavior subtly breaks guide quality model
#65
tlnagy
opened
1 year ago
0
patch for doubling edge case
#64
tlnagy
closed
1 year ago
0
Consolidate cells and guides
#63
tlnagy
opened
1 year ago
0
Improve flexibility of screen design
#62
tlnagy
opened
1 year ago
0
Fix when CI runs
#61
odow
closed
1 year ago
4
add support for growth without subsampling
#60
tlnagy
closed
1 year ago
1
add plausible analytics to docs
#59
tlnagy
closed
1 year ago
1
TagBot trigger issue
#58
JuliaTagBot
closed
1 year ago
4
Multiprocessing improvements
#57
tlnagy
closed
1 year ago
1
Update for Julia 1+
#56
tlnagy
closed
1 year ago
1
Info about upcoming removal of packages in the General registry
#55
KristofferC
closed
5 years ago
1
Add Julia 1.0 support
#54
tlnagy
closed
1 year ago
0
[WIP] Add multibin support
#53
tlnagy
closed
6 years ago
1
"-Inf" values of obs_phenotype
#52
hyunhwan-jeong
closed
6 years ago
5
"run.jl config" is not working
#51
hyunhwan-jeong
closed
6 years ago
4
Error tagging new release
#50
attobot
closed
6 years ago
0
Add an example generating count data matrix
#49
hyunhwan-jeong
closed
6 years ago
2
Exporting count matrix
#48
hyunhwan-jeong
closed
6 years ago
16
update calls to old variable name; fix for #46
#47
tlnagy
closed
7 years ago
0
error on `exp` mode
#46
hyunhwan-jeong
closed
7 years ago
1
Things remaining to do for slim crispulator
#45
tlnagy
closed
8 years ago
0
Build out documentation
#44
tlnagy
closed
6 years ago
1
Modularize and add integration tests
#43
tlnagy
closed
1 year ago
0
Current design crashes with latest stats packages
#42
tlnagy
closed
8 years ago
4
Plotting on 32-bit windows is broken
#41
tlnagy
closed
8 years ago
0
Test simulation on Windows
#40
tlnagy
closed
8 years ago
0
Restructure library.jl
#39
tlnagy
opened
8 years ago
0
Performance of analysis code has degraded
#38
tlnagy
closed
6 years ago
3
Improve terminology
#37
tlnagy
closed
8 years ago
4
Add support for yaml encoded run parameters
#36
tlnagy
closed
8 years ago
5
Add noise to growth assay
#35
tlnagy
closed
8 years ago
0
scan_rep_space analysis is crashing on server
#34
tlnagy
closed
8 years ago
2
Add analysis that generates plots for various runs
#33
tlnagy
closed
8 years ago
0
Build out debug vs full runs of experiments
#32
tlnagy
closed
8 years ago
0
Refactor experiments.jl
#31
tlnagy
closed
8 years ago
0
Separating increasing and decreasing genes yield poor AUPRC/venn scores
#30
tlnagy
closed
8 years ago
0
Specific pairwise comparisons to explore
#29
tlnagy
closed
8 years ago
0
auprc computed incorrectly if first label is a true hit
#28
tlnagy
closed
8 years ago
0
auroc computation checks != negative label, not == positive label
#27
tlnagy
closed
8 years ago
0
auprc implementation is unnecessarily O(n^2)
#26
tlnagy
closed
8 years ago
0
Add additional quality metrics
#25
tlnagy
closed
8 years ago
3
Allow for multiple doublings before sampling
#24
tlnagy
closed
8 years ago
3
Alternative sigmoid function
#23
tlnagy
closed
8 years ago
1
Test all the things
#22
tlnagy
opened
8 years ago
0
Running tests from terminal crashes due to loading full run script
#21
tlnagy
closed
8 years ago
0
Unexpected behavior by decreasing genes
#20
tlnagy
closed
8 years ago
4
Normalize to median of negative controls
#19
tlnagy
closed
8 years ago
1
Comparing methods code is broken
#18
tlnagy
closed
8 years ago
0
Refactor into package
#17
tlnagy
closed
8 years ago
1
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