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tlnagy
/
OMETIFF.jl
I/O operations for OME-TIFF files in Julia
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fix accidental transposition that broke rectangular image loading
#61
tlnagy
closed
4 years ago
1
DimensionMismatch("array could not be broadcast to match destination")
#60
JiangXL
closed
4 years ago
7
CompatHelper: bump compat for "ImageMetadata" to "0.9"
#59
github-actions[bot]
closed
4 years ago
1
CompatHelper: bump compat for "AxisArrays" to "0.4"
#58
github-actions[bot]
closed
4 years ago
1
Obtain Colors&FixedPointNumbers via ImageCore
#57
timholy
closed
4 years ago
3
Suitable for general use on TIFFs?
#56
IanButterworth
closed
4 years ago
3
CompatHelper: bump compat for "ImageMetadata" to "0.8"
#55
github-actions[bot]
closed
4 years ago
2
[WIP] Add testing on windows
#54
tlnagy
closed
4 years ago
1
CompatHelper: bump compat for "Colors" to "0.11"
#53
github-actions[bot]
closed
4 years ago
1
Add setters to memory-mapped arrays
#52
tlnagy
opened
4 years ago
0
Add support for memory mapping Tiff files
#51
tlnagy
closed
4 years ago
1
CompatHelper: bump compat for "Colors" to "0.10"
#50
github-actions[bot]
closed
4 years ago
1
CompatHelper: bump compat for "FixedPointNumbers" to "0.7"
#49
github-actions[bot]
closed
4 years ago
1
Add documentation of internals
#48
tlnagy
closed
4 years ago
1
CompatHelper: bump compat for "Unitful" to "0.18"
#47
github-actions[bot]
closed
4 years ago
1
add support for preserving unused dimensions, fixes #45¬
#46
tlnagy
closed
4 years ago
1
Add option for preserving dimensions of length 1
#45
tlnagy
closed
4 years ago
0
CompatHelper: bump compat for "Unitful" to "0.17"
#44
github-actions[bot]
closed
4 years ago
1
add support for compathelper tracking of deps
#43
tlnagy
closed
4 years ago
1
Spin out the position axis and return a list of (N-1)D images instead of a ND image
#42
tlnagy
opened
4 years ago
1
Support variable axis lengths across positions and reduce memory footprint
#41
tlnagy
closed
4 years ago
1
Add support for dumping internal micromanager imaging JSON
#40
tlnagy
closed
4 years ago
1
add ability to output embedded OME-XML inside a OMETIFF
#39
tlnagy
closed
4 years ago
1
Incomplete micromanager acquisitions cause out of bounds error
#38
tlnagy
closed
4 years ago
0
switch to the lightweight ImageShow for show funcs
#37
tlnagy
closed
5 years ago
1
Profile loading code
#36
tlnagy
closed
4 years ago
3
verify that an error is thrown when loading non-ometiff files
#35
tlnagy
closed
5 years ago
3
transition package to pkg3 format, fixes #31
#34
tlnagy
closed
5 years ago
2
add support for extracting elapsed time from the omexml
#33
tlnagy
closed
5 years ago
3
Use proper mapping for OME-XML time units to Unitful time units
#32
tlnagy
closed
4 years ago
1
Update to Pkg3 format
#31
tlnagy
closed
5 years ago
0
add ability to save OMETIFF files
#30
tlnagy
opened
5 years ago
0
document and add more examples
#29
tlnagy
closed
4 years ago
1
return unitful spatial axes, fixes #26
#28
tlnagy
closed
5 years ago
3
Extract and report actual elapsed time information
#27
tlnagy
closed
5 years ago
1
Annotate spatial axes with spatial units if available
#26
tlnagy
closed
5 years ago
0
ERROR: OMETIFF can't be installed because it has no versions that support 0.5.2 of julia
#25
dns43
closed
5 years ago
1
switch to julian iteration protocol for ifds
#24
tlnagy
closed
5 years ago
3
use codecov instead of coveralls
#23
tlnagy
closed
5 years ago
1
fix for zlib issues
#22
tlnagy
closed
5 years ago
0
Switch to new Julian iteration protocol.
#21
tlnagy
closed
5 years ago
1
add support for intercalated slices in same file, fixes #19
#20
tlnagy
closed
5 years ago
0
In multi-position files the IFDs are sometimes intercalated so the naive next function fails
#19
tlnagy
closed
5 years ago
0
Update for Julia 1.0 and EzXML 0.8
#18
tlnagy
closed
6 years ago
2
Fix Micro-Manager (and other?) byte order
#17
rsrock
closed
6 years ago
3
Something up with MicroManager OMEs?
#16
rsrock
closed
6 years ago
1
add support for bundling acquisition comments with data
#15
tlnagy
closed
6 years ago
0
Handle cases where file is renamed and the filepath in the OME-XML is out of date
#14
tlnagy
closed
4 years ago
7
add prelim support for position as an additional axis
#13
tlnagy
closed
6 years ago
2
Extract general TIFF code into a separate package and only keep OMETIFF specific stuff here
#12
tlnagy
closed
2 years ago
4
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