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tmuetze
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Bioconductor_RCy3_the_new_RCytoscape
Update RCytoscape to work for Cytoscape 3.0 and higher using CyREST
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updated link (again)
#46
AlexanderPico
closed
6 years ago
1
Select non-standard layouts such as those from yFiles
#45
kieran-mace
opened
6 years ago
1
Rules cannot overturn a style
#44
kieran-mace
opened
6 years ago
3
Possible bug in getGraphFromCyWindow
#43
laurent-jacob
opened
7 years ago
1
saveNetwork could not save session
#42
bowenli37
opened
7 years ago
1
Support of nonsimple graphs?
#41
magnuspalmblad
closed
6 years ago
1
Strange behavior when combining Direct and Rule property changes
#40
fkgruber
opened
7 years ago
3
Potential vignettes
#39
jooolia
closed
8 years ago
0
Support on non-linux systems
#38
ahmohamed
closed
8 years ago
5
Removed scale argument and added h to saveImage function.
#37
jooolia
closed
8 years ago
0
hideSelectedEdges() does not work
#36
St-Hakky
closed
8 years ago
1
remove scale argument from saveImage()
#35
jooolia
closed
8 years ago
0
Layout visualization difference
#34
Vessy
opened
8 years ago
0
Edge rules
#33
Vessy
opened
8 years ago
1
cyPlot missing the integer to numeric type conversion for edges
#32
Vessy
opened
8 years ago
0
Functions for selection and for copying
#31
jooolia
closed
8 years ago
0
Is there a way to change the name of a network using Rcy3?
#30
risserlin
opened
8 years ago
1
Issue selecting nodes with selectNodes()
#29
risserlin
opened
8 years ago
2
get an error with getGraphFromCyWindow when there are "(" in the node names
#28
risserlin
closed
8 years ago
5
Fixing issue with cyplot and nodes without attributes
#27
jooolia
closed
8 years ago
8
Added package help file. More info to be added soon.
#26
jooolia
closed
8 years ago
0
having difficultes sending graph attributes to Cytoscape via RCy3
#25
jooolia
closed
8 years ago
3
Adding Roxygen comments to RCy3.R to give package help documentation?
#24
jooolia
closed
8 years ago
1
small change to quotation characters in vignette
#23
jooolia
closed
8 years ago
0
saveImage function fails
#22
stefanavey
closed
8 years ago
1
several vizProp functions not working
#21
m-grimes
closed
8 years ago
2
setEdgeLineWidthRule, setEdgeColorRule, copyVisualStyle don't work
#20
m-grimes
closed
8 years ago
1
Modified saveImage to allow pdf or svg in addition to png
#19
stefanavey
closed
9 years ago
0
setNodeColorRule doesn't set colors
#18
m-grimes
closed
8 years ago
0
existing.Cytoscape.Window help file works but not function
#17
m-grimes
closed
8 years ago
9
object "cw" not found
#16
m-grimes
closed
9 years ago
5
Fixed call to getAllEdges()
#15
ddiez
closed
9 years ago
1
Add an override for the Bioconductor Build System (BBS)
#14
dtenenba
closed
9 years ago
0
graph error with 99.6
#13
m-grimes
closed
9 years ago
1
99.6 existing.CytoscapeWindow failed to connect
#12
m-grimes
closed
9 years ago
1
something strange with RCY 99.5?
#11
m-grimes
closed
9 years ago
0
something strange with RCY 99.5?
#10
m-grimes
closed
9 years ago
0
something strange with RCY 99.5?
#9
m-grimes
closed
9 years ago
0
existing.Cytoscape.Window
#8
m-grimes
closed
9 years ago
1
arrow visprops errors
#7
m-grimes
closed
9 years ago
0
nodeShape functions
#6
m-grimes
closed
9 years ago
0
existing.CytoscapeWindow
#5
m-grimes
closed
9 years ago
0
addGraphToGraph
#4
pshannon-bioc
closed
9 years ago
1
"No existing Cytoscape window named ..."
#3
pshannon-bioc
closed
9 years ago
1
Revert "Georgis part"
#2
tmuetze
closed
9 years ago
0
Georgis part
#1
tmuetze
closed
9 years ago
0