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tomazc
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iCount
iCount, protein-RNA interaction analytics
http://icount.biolab.si
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Could iCount xlsites support soft-clipping?
#215
TomSmithCGAT
opened
6 months ago
0
AssertionError : assert current_gene not in gene_ids
#214
mohamedbahru
opened
6 months ago
0
Assertion error : assert starts == sorted(starts)
#213
mohamedbahru
opened
6 months ago
0
Help with installation
#212
valerieT1998
opened
1 year ago
1
permutation test for multi-mapped reads
#211
HibaLaghrissi
closed
1 year ago
0
How to cite update
#210
michaelmhoffman
opened
2 years ago
0
iCount xlsites--many reads with second-start not falling on segmentation
#209
ryanmarina
opened
2 years ago
0
Adding multithreading option for cutadapt and demultiplex sub commands
#208
skchronicles
opened
2 years ago
3
iCount demultiplex --minimum_length cannot work
#207
wjzhangiris
opened
3 years ago
0
issue with indexstar
#206
vd77
opened
3 years ago
0
Application of iCount in Arabidopsis (plants) causes errors.
#205
Linhua-Sun
closed
3 years ago
2
Snakemake
#204
Faitero
opened
3 years ago
2
Error in demultiplex.py with 3' barcode
#203
CharlotteAnne
opened
4 years ago
1
Clusters command generates empty file
#202
JulieCremaschi
closed
4 years ago
5
iCount clusters: error
#201
tianxiahuihui
closed
4 years ago
2
Error in generating segments
#200
garimak05
closed
4 years ago
2
Setup fails with pip install
#199
SamBryce-Smith
opened
4 years ago
2
merge feat test data with master
#198
CharlotteAnne
closed
3 years ago
1
Snakemake
#197
Faitero
closed
4 years ago
0
Snakemake
#196
Faitero
closed
4 years ago
1
Snakemake
#195
Faitero
closed
4 years ago
2
star: Fix shared memory use, resolves #169
#194
tomazc
closed
4 years ago
1
license: Update license and copyright
#193
tomazc
closed
4 years ago
0
env: Add support for python 3.7
#192
tomazc
closed
5 years ago
1
Question: iCount xlsites expected runtime
#191
mirax87
opened
5 years ago
2
setup.py: Add missing comma
#190
JureZmrzlikar
closed
5 years ago
1
Enable 3' barcode demultiplex
#189
JureZmrzlikar
closed
4 years ago
2
Rework RNA-maps
#188
JureZmrzlikar
closed
4 years ago
8
setup: Fix docker build and BED formatting issues in bedtools, fixes #174
#187
tomazc
closed
5 years ago
1
segment:error in gene level segmentation
#186
snk9987
opened
6 years ago
1
xlsites: Add max_barcodes parameter
#185
JureZmrzlikar
closed
6 years ago
1
bedgraph: support additional track-configuring parameters
#184
JureZmrzlikar
closed
6 years ago
1
SyntaxError Invalid syntax
#183
krutru
closed
6 years ago
2
tests: small fixes, problem accessing FTP in Travis
#182
JureZmrzlikar
closed
6 years ago
1
Small fixes in xlsites module
#181
JureZmrzlikar
closed
6 years ago
3
[E::bgzf_flush] File write failed (wrong size)
#180
sarahbonnin
closed
6 years ago
2
confusion between --mapq_th and --multimax in iCount xlsites
#179
YannAudic
closed
6 years ago
2
demultiplex: Handle case of empty demultiplexed file
#178
JureZmrzlikar
closed
6 years ago
1
segment: Correct the name of regions file
#177
JureZmrzlikar
closed
6 years ago
0
trouble understanding the cDNA % in the summary gene report
#176
YannAudic
closed
6 years ago
4
linters: Set line length to 119
#175
JureZmrzlikar
closed
6 years ago
1
iCount clusters fails to predict clusters with bedtools 2.27 - no error or warning
#174
mirax87
closed
5 years ago
3
summary: Refactor reports
#173
JureZmrzlikar
closed
6 years ago
3
gencode: Download primary assembly of genome/annotation
#172
JureZmrzlikar
closed
6 years ago
3
demultiplex: Support barcodes with different sizes
#171
JureZmrzlikar
closed
6 years ago
1
add --genomeLoad LoadAndRemove
#170
bakerwm
closed
4 years ago
2
Suggest: '--genomeLoad', 'LoadAndRemove' for STAR
#169
bakerwm
closed
4 years ago
3
bedgraph: Add BED to bedGraph converter
#168
JureZmrzlikar
closed
6 years ago
3
Fix type of ``ratio_th`` to float
#167
JureZmrzlikar
closed
6 years ago
1
xlsites: Fix randomer counting
#166
tomazc
closed
6 years ago
2
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