This repository contains the functionality to standardize the Checklist of non-native freshwater fishes in Flanders, Belgium (Verreycken et al. 2018) to a Darwin Core checklist that can be harvested by GBIF. It was developed for the TrIAS project.
source data → Darwin Core mapping script → generated Darwin Core files
The repository structure is based on Cookiecutter Data Science and the Checklist recipe. Files and directories indicated with GENERATED
should not be edited manually.
├── README.md : Description of this repository
├── LICENSE : Repository license
├── alien-fishes-checklist.Rproj : RStudio project file
├── .gitignore : Files and directories to be ignored by git
│
├── data
│ ├── raw : Source data, input for mapping script
│ └── processed : Darwin Core output of mapping script GENERATED
│
├── docs : Repository website GENERATED
│
├── specification : Data specifications for the Darwin Core files
│
└── src
├── dwc_mapping.Rmd : Darwin Core mapping script, core functionality of this repository
├── _site.yml : Settings to build website in docs/
└── index.Rmd : Template for website homepage
dwc_mapping.Rmd
R Markdown file in RStudioRun > Run All
to generate the processed dataBuild > Build website
to generate the processed data and build the website in docs/