trias-project / rinse-pathways-checklist

🚢 RINSE - Pathways and vectors of biological invasions in Northwest Europe
https://trias-project.github.io/rinse-pathways-checklist
MIT License
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checklist dataset gbif invasive-species oscibio r rstats

RINSE - Pathways and vectors of biological invasions in Northwest Europe

Rationale

This repository contains the functionality to standardize the data of Zieritz et al. (2017) to a Darwin Core checklist that can be harvested by GBIF. It was developed for the TrIAS project.

Workflow

source data (transcribed from the original Supplementary Table 2 Word file) → Darwin Core mapping script → generated Darwin Core files

Published datasets

Repo structure

The repository structure is based on Cookiecutter Data Science and the Checklist recipe. Files and directories indicated with GENERATED should not be edited manually.

├── README.md              : Description of this repository
├── LICENSE                : Repository license
├── rinse-pathways-checklist.Rproj : RStudio project file
├── .gitignore             : Files and directories to be ignored by git
│
├── data
│   ├── raw                : Source data, input for mapping script
│   └── processed          : Darwin Core output of mapping script GENERATED
│
├── docs                   : Repository website GENERATED
│
└── src
    ├── dwc_mapping.Rmd    : Darwin Core mapping script, core functionality of this repository
    ├── _site.yml          : Settings to build website in docs/
    └── index.Rmd          : Template for website homepage

Installation

  1. Clone this repository to your computer
  2. Open the RStudio project file
  3. Open the dwc_mapping.Rmd R Markdown file in RStudio
  4. Install any required packages
  5. Click Run > Run All to generate the processed data
  6. Alternatively, click Build > Build website to generate the processed data and build the website in docs/

Contributors

List of contributors

License

MIT License