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trichelab
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spiky
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add bedpe support
#40
lmckinno
closed
2 years ago
0
Scan_spiked_bam error
#39
swils6
closed
2 years ago
0
model_glm_pmol log link
#38
swils6
opened
3 years ago
0
Converter function for model_glm_pmol
#37
swils6
opened
3 years ago
0
Spike in control contigs are in separate bam from genomic contigs
#36
swils6
opened
3 years ago
1
read_bedpe, format_coverage, and other breaking changes
#35
ttriche
closed
2 years ago
3
add rudimentary looping to scan_*_contigs; fix get_spike_depth
#34
ttriche
closed
3 years ago
0
Multi-thread scan contig functions
#33
lmckinno
closed
3 years ago
1
bump version, add better error handling for scan_*_contigs
#32
ttriche
closed
3 years ago
0
Fixes from Lori's review
#31
lmckinno
closed
3 years ago
1
refactor into scan_spike_contigs and scan_genomic_contigs
#30
ttriche
closed
3 years ago
0
R CMD check fixes
#29
lmckinno
closed
3 years ago
1
couple tiny changes ;-)
#28
ttriche
closed
3 years ago
0
add_frag_info does not identify unmethylated fragments for 80b controls
#27
prisnir-zz
opened
3 years ago
2
methylation_specificity generates NaN/NA
#26
prisnir-zz
opened
3 years ago
1
More issues with scanning bam files into a ssb_res like objects
#25
prisnir-zz
opened
3 years ago
0
fix issue #21
#24
ttriche
closed
3 years ago
1
restaging changes for bayes additive model etc.
#23
ttriche
closed
3 years ago
2
add spike verification, bayes additive model, etc.
#22
ttriche
closed
3 years ago
0
Error while testing get_spiked_coverage, get_merged_gr and ScanBamParam
#21
prisnir-zz
closed
3 years ago
1
add multi-CRAM/BAM support (tested on CRAM/BAM examples)
#20
ttriche
closed
3 years ago
0
Bug fixes in vignette, predict_pmol
#19
lmckinno
closed
3 years ago
0
Bug fixes in vignette, predict_pmol
#18
lmckinno
closed
3 years ago
0
vignette not rendering, failing to download package
#17
swils6
opened
3 years ago
0
Specify minimum R version in `README`
#16
michaelmhoffman
closed
3 years ago
3
Cite spike-in paper in the vignette
#15
michaelmhoffman
opened
3 years ago
0
0 errors, 0 warnings
#14
ttriche
closed
3 years ago
0
Update vignette
#13
lmckinno
closed
3 years ago
0
add biocViews
#12
ttriche
closed
3 years ago
0
fix various issues with R CMD check and friends
#11
ttriche
closed
3 years ago
0
Few bug fixes
#10
lmckinno
closed
3 years ago
0
actually fix LICENSE ( issue #3 )
#9
ttriche
closed
3 years ago
0
fix #3 and merge Lauren's fixes
#8
ttriche
closed
3 years ago
0
Updates to predict_pmol, some bug fixes
#7
lmckinno
closed
3 years ago
1
fix ssb_res and add manpage for methylation specificity
#6
ttriche
closed
3 years ago
0
Update vignette and methylation_specificity
#5
lmckinno
closed
3 years ago
1
Update methylation_specificity and vignette
#4
lmckinno
closed
3 years ago
3
No LICENSE
#3
michaelmhoffman
closed
3 years ago
0
CRAM read counting?
#2
ttriche
closed
3 years ago
1
refactor functions & break out dependencies
#1
ttriche
closed
3 years ago
3