tseemann prokka issues - Githubissues

tseemann / prokka

:zap: :aquarius: Rapid prokaryotic genome annotation

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Could not run command: tbl2asn

#463 avonm closed 4 years ago
1
Blast+ 2.10.0 cannot find the genus-specific protein db / possibility to have custom path to blast db?

#462 flass opened 4 years ago
2
Could not run command: tbl2asn

#461 lucaspompeun closed 4 years ago
1
tbl2asn (25.8) error based on prokka command line flags

#460 MGNute opened 4 years ago
1
feature request: official prokka Docker image and Dockerfile

#459 evanbiederstedt closed 4 years ago
7
no output with prokka 1.14.5

#458 ziejan closed 4 years ago
3
Prokka not outputting gbk files

#457 Rob-murphys closed 4 years ago
2
Prokka truncates names of misc_RNAs in gbk

#456 shelkmike opened 4 years ago
0
format of GFF files

#455 ze236789 opened 4 years ago
2
using --proteins with two reference files (for metagenome assembly)

#454 DariiaVyshenska closed 4 years ago
1
tbl2asn expired

#453 nahanoo closed 4 years ago
27
Use prokka to reannotate genome with existing locus tags

#452 thorellk closed 4 years ago
1
Closing .fsa and .fna files

#451 almahmoud opened 4 years ago
2
How to annotate multiple sequences at once?

#450 adc123456 closed 4 years ago
1
Prokka does not recognize blast 2.10 as >= blast 2.8

#449 natachacouto closed 4 years ago
19
Prokka conda install broken.

#448 Rob-murphys closed 4 years ago
6
Setting minimal coverage of blast against sprot

#447 dyogoborst closed 4 years ago
3
Prokka issue :Can't locate Bio/Root/Version.pm in @INC

#446 RamaSravanimeduri closed 4 years ago
14
add gene_biotype in annotation?

#445 angelovangel opened 4 years ago
4
Replace/Drop `tbl2asn`

#444 apeltzer opened 4 years ago
19
EC_number is an invalid GFF3 attribute key

#443 standage opened 4 years ago
1
Wrong annotation at /gene ?

#442 ashdederich closed 4 years ago
1
Large .gbk with wrong /translation sequence

#441 regelka opened 4 years ago
6
Correct version of SignalP detected but never called

#440 jeanmanguy opened 4 years ago
2
Question: Reducing hypothetical proteins

#439 YiJessePi closed 5 years ago
1
Issues installing prokka with brew, prokka 1.1.4.0

#438 evanbiederstedt closed 5 years ago
11
Problems installing Prokka

#437 schlogl2017 closed 5 years ago
3
no run no check

#436 alienzj closed 4 years ago
0
makeblastdb v2.10.0

#435 algowen closed 5 years ago
3
e-value flag

#434 YiJessePi opened 5 years ago
1
Prokka default DBs

#433 YiJessePi closed 5 years ago
5
Add option "prodigal training file" let prodigal read exist training file.

#432 chen1i6c04 closed 5 years ago
1
Question about IS annotations

#431 avonm closed 5 years ago
1
Can I ask prokka to only produce the gbk file?

#430 MolyWang closed 4 years ago
8
Could you provide an option for using prodigal training model ?

#429 current788 closed 5 years ago
5
Include e-values of the hits in output

#428 tseemann opened 5 years ago
3
Issue with running -setupdb

#427 izakbed closed 5 years ago
3
Some databases seems outdated a long time ago

#426 liubovch closed 5 years ago
3
Document, or remove, need for "less" with --doc

#425 tseemann closed 5 years ago
0
User HMM database Option

#424 Calebros closed 5 years ago
4
Question --rfam option with infernal

#423 caity-s opened 5 years ago
4
Antimicrobial genes annotation result is different from blast's

#422 lijierr closed 5 years ago
2
adding annotations from custom dna sequences (multifasta)

#421 rguerillot opened 5 years ago
1
prokka getting stuck on tbl2asn

#420 nixon444 closed 5 years ago
3
Ubuntu issues loading fasta file "not a readable non-empty FASTA"

#419 beherrm closed 5 years ago
19
Add support for SignalP-5.0

#418 ealdraed closed 5 years ago
1
Question: aerobic and anaerobic

#417 alienzj closed 5 years ago
2
Source of IS sequences

#416 oschwengers closed 5 years ago
2
[enhancement] re-annotate genome with same locus tags

#415 alexweisberg closed 5 years ago
2
"uniq" is not exported by the List::Util module

#414 stevendavis closed 5 years ago
6

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