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tskit-dev
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pyslim
Tools for dealing with tree sequences coming to and from SLiM.
MIT License
26
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23
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Release tasks
#292
petrelharp
closed
1 year ago
0
added slim clone and compile to GH actions
#291
andrewkern
closed
1 year ago
3
max_slim_mutation_id function
#290
mufernando
closed
1 year ago
10
deprecate unique labels by group
#289
petrelharp
closed
1 year ago
0
how to migrate code
#288
petrelharp
closed
1 year ago
0
deprecate unique_labels_by_group
#287
petrelharp
closed
1 year ago
0
annotate empty ts
#286
petrelharp
closed
1 year ago
0
warn if overwriting mutation metadata
#285
petrelharp
closed
1 year ago
0
read new section on time units
#284
petrelharp
closed
1 year ago
14
use extant reference sequence (closes #218)
#283
petrelharp
closed
1 year ago
0
mention how to install other versions, closes #276
#282
petrelharp
closed
1 year ago
0
don't always do inkscape; closes #280
#281
petrelharp
closed
1 year ago
0
remove inkscape dependency for docs build
#280
petrelharp
closed
1 year ago
0
Time units: closes #222
#279
petrelharp
closed
1 year ago
2
time units docs: closes #222
#278
petrelharp
closed
1 year ago
2
deal with `first` stage
#277
petrelharp
closed
1 year ago
5
say in 'installation' how to find/install other versions
#276
petrelharp
closed
1 year ago
0
remove individual_{populations,times,locations} (closes #255)
#275
petrelharp
closed
1 year ago
0
conda slim v4
#274
petrelharp
closed
1 year ago
0
more testing of population remapping
#273
petrelharp
closed
1 year ago
3
run missing recipe
#272
petrelharp
closed
1 year ago
0
Issues with recapitate tutorial on pyslim manual
#271
isadoo
closed
1 year ago
8
first() events can now do more stuff than before
#270
bhaller
closed
1 year ago
1
Error with pyslim.load 'AttributeError: can't set attribute'
#266
asadrh8
closed
2 years ago
4
Recapitation with recent demographic events + historical sampling ?
#264
ChrystelleDelord
closed
2 years ago
2
post-SLiM-v4 release tasks
#263
petrelharp
closed
1 year ago
1
separate docs CI
#262
petrelharp
closed
2 years ago
0
version bump
#261
petrelharp
closed
2 years ago
1
Release tasks
#260
petrelharp
closed
1 year ago
1
reinstate tests after next tskit release
#259
petrelharp
closed
1 year ago
1
check migration table after remapping populations
#258
petrelharp
closed
2 years ago
1
fixup `test_nucleotide_spectrum`
#257
petrelharp
closed
2 years ago
0
add tests of population remapping
#256
petrelharp
closed
1 year ago
2
remove `pyslim.individual_populations`, `_times`, and `_locations`
#255
petrelharp
closed
1 year ago
1
catch out-of-date ts format and throw warning
#254
petrelharp
closed
2 years ago
0
Slim v4
#253
petrelharp
closed
2 years ago
2
`modelType` has moved to community
#252
petrelharp
closed
2 years ago
1
allow annotation of non-zero population
#251
petrelharp
closed
1 year ago
1
check for ts version in operations like pyslim.recapitate( )
#250
petrelharp
closed
1 year ago
2
passing a rate map to `recombination_rate` does strange things
#249
petrelharp
closed
1 year ago
3
Error with recapitation with non-uniform recombination map
#248
ChrystelleDelord
closed
2 years ago
2
Weird "pySLiM" casing on the GitHub main page
#247
bhaller
closed
2 years ago
0
SLiM's multispecies branch breaks pyslim-based treeseq tests
#246
bhaller
closed
2 years ago
6
use schema if present; closes #242
#243
petrelharp
closed
2 years ago
0
mixed history breaks pyslim import
#242
petrelharp
closed
2 years ago
0
kastore not brought in by installing pyslim
#241
bhaller
closed
2 years ago
10
`unique_labels_by_group` returns False for unused groups
#240
petrelharp
closed
2 years ago
1
adding magic
#239
andrewkern
closed
2 years ago
0
Redirect for docs object.inv
#238
benjeffery
closed
2 years ago
1
inconsistent time scaling after calling pyslim.recapitate
#237
bguo068
closed
2 years ago
1
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