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what-is-an-arg-paper
Manuscript and code for the "What is an ARG?" paper
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Discuss Kuhner
#370
jeromekelleher
closed
11 months ago
0
Fix whitespace
#369
jeromekelleher
closed
11 months ago
0
Add description of simulation
#368
jeromekelleher
closed
11 months ago
0
Change KwARG to 1-re-node
#367
hyanwong
closed
11 months ago
0
A pass at unary nodes
#366
jeromekelleher
closed
11 months ago
1
Comments from Andrew Vaughn
#365
hyanwong
closed
10 months ago
1
Switch KwARG output to 1-RE-node
#364
hyanwong
closed
11 months ago
0
Add version of simplification fig with edges
#363
hyanwong
closed
11 months ago
5
Tidy Fig 6
#362
hyanwong
closed
11 months ago
1
Add coloured background to the pedigree plot
#361
hyanwong
closed
11 months ago
0
Add legend back into Fig 4
#360
hyanwong
closed
11 months ago
0
Fig 6 fixed
#359
JereKoskela
closed
11 months ago
0
Bug in fig 6
#358
jeromekelleher
closed
11 months ago
0
Correct fig 4C labels
#357
hyanwong
closed
11 months ago
0
Fig 4C has wrong node labels
#356
hyanwong
closed
11 months ago
0
Unary nodes
#355
jeromekelleher
closed
11 months ago
9
Remove "notebooks" dir
#354
jeromekelleher
closed
11 months ago
5
Emphasise unary nodes in tsinfer output
#353
jeromekelleher
closed
10 months ago
5
Clarification on eARGs vs gARGs - when are they not equivalent?
#352
hyanwong
closed
10 months ago
4
Update abstract
#351
jeromekelleher
closed
11 months ago
0
Actually fix the numeric labels, whoops.
#350
hyanwong
closed
11 months ago
0
Switch back to letters for fig 4 labels
#349
hyanwong
closed
11 months ago
1
Add a tabular representation of a gARG somewhere
#348
hyanwong
closed
10 months ago
13
Is Shipilina's edge definition "specialised" or actually incompatible.
#347
hyanwong
closed
11 months ago
0
Fig small
#346
hyanwong
closed
11 months ago
0
Edit pass
#345
jeromekelleher
closed
11 months ago
0
Add description of missing box regions in Fig 3
#344
hyanwong
closed
11 months ago
0
Trees for e arg
#343
jeromekelleher
closed
11 months ago
0
Remove accidental ts3 dump
#342
hyanwong
closed
11 months ago
0
File path in illustrations.py oundError: [Errno 2] No such file or directory: '/Users/yan/ts3.trees'
#341
jeromekelleher
closed
11 months ago
0
Gideon and alex comments
#340
jeromekelleher
closed
11 months ago
0
Add para on inferring precision about recomb to "Precision" section?
#339
jeromekelleher
closed
10 months ago
2
Make Fig 3 fit on half a page
#338
hyanwong
closed
11 months ago
2
Add edge annotations to simplification figure?
#337
jeromekelleher
closed
11 months ago
6
Comments on eARG -> gARG section
#336
jeromekelleher
closed
10 months ago
1
Note Mathieson and Scally definition is almost a gARG
#335
jeromekelleher
closed
10 months ago
1
Introduction paragraph on "problems" needs more concrete detail
#334
jeromekelleher
closed
10 months ago
1
Merge sc2 discussion
#333
jeromekelleher
closed
11 months ago
0
Flag up kwarg RE nodes using the msprime flags
#332
hyanwong
closed
11 months ago
0
Edits before comments
#331
jeromekelleher
closed
11 months ago
0
Update
#330
jeromekelleher
closed
11 months ago
0
Include Parida et al's work in ARG review
#329
jeromekelleher
closed
11 months ago
0
Follow ups3
#328
jeromekelleher
closed
11 months ago
0
ARGON ARG format
#327
jeromekelleher
closed
10 months ago
4
Pass through latter sections
#326
jeromekelleher
closed
11 months ago
0
2-RE-node output from kwARG conversion needs flags setting
#325
hyanwong
closed
11 months ago
0
Clean up
#324
jeromekelleher
closed
11 months ago
0
Excess padding at the bottom of simplification figure
#323
jeromekelleher
closed
11 months ago
0
Wiuf and Hein ARG figure too tall
#322
jeromekelleher
closed
11 months ago
0
Example gARG figure (fig 1) too tall
#321
jeromekelleher
closed
11 months ago
0
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