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tttianhao
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CLEAN
CLEAN: a contrastive learning model for high-quality functional prediction of proteins
MIT License
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Suspended system to explicitly to high model extension third parties app
#53
ay6z
closed
2 weeks ago
0
EC confidence threshold
#52
ZhuLvs
opened
2 weeks ago
1
Training results on 4-ec number
#51
Thmoas-sketch
closed
4 weeks ago
1
Error during inferencing
#50
chiragmathur27
closed
4 weeks ago
1
inference
#49
ZhuLvs
closed
4 weeks ago
1
Set Up Questions
#48
emilyhyde
opened
3 months ago
0
Annotating functions of proteins having more than 1022 amino acid residues
#47
Sourdoc
closed
4 months ago
1
Changes in dataset
#46
doxxitxxyoung
closed
6 months ago
1
Using local clean for large-scale data prediction
#45
sjy-eyujun
opened
7 months ago
0
FileNotFoundError: [Errno 2] No such file or directory: './data/esm_data/D4AXL1.pt'
#44
dreamfly999
closed
7 months ago
0
Just one EC
#43
Thexiyang
opened
9 months ago
0
data clustering and split
#42
elgeekim
closed
9 months ago
2
Cannot reproduce results in README
#41
pgmikhael
closed
9 months ago
2
offline tool issue with the training
#40
Bio-finder
closed
9 months ago
2
Job failed due to undefined. Please try again, or click the feedback link at the bottom of the page to report a problem.
#39
AcetylCoALab
opened
11 months ago
0
Duplicated amino acid sequece in datasets
#38
YoungJaeBae
closed
11 months ago
0
How to set parameters？
#37
moonhuwaa
closed
1 year ago
2
on single sequence query: ValueError: Only one class present in y_true. ROC AUC score is not defined in that case.
#36
emilyvansyoc
closed
1 year ago
2
The cross-validation process details.
#35
jixiang-all
closed
1 year ago
3
How to get embedding distance between the query protein and the CLEAN-predicted EC number
#34
kaden1670
closed
1 year ago
3
How to filter the prediction results based on the pairwise distance between cluster center of EC number?
#33
xylapple2013
closed
1 year ago
1
No such file or directory: './gmm_test/GMM_100_500_0.pkl'
#32
kaden1670
closed
1 year ago
2
pretrained model
#31
OrangeCat7777777
closed
1 year ago
1
Questions about querying unclassified proteins
#30
kaden1670
closed
1 year ago
1
Attempting to deserialize object on a CUDA
#29
MBinso
closed
1 year ago
2
training & validation details
#28
artcmd
closed
1 year ago
1
how can I get Confidencel Level ?
#27
zhangzhenhuajack
closed
1 year ago
1
Inquiry about the inplementation of SupCon-Hard loss
#26
yangzhao1230
closed
1 year ago
2
non-deterministic behavior in inference
#25
pagpires
closed
1 year ago
1
Details about data split
#24
yangzhao1230
closed
9 months ago
1
Is there a threshold for relatively reliable prediction of pairwise distance
#23
timeresistance1996
closed
1 year ago
1
problem with job at web server
#22
daisykuma22
closed
1 year ago
1
Some confusion about Fig 2.F in the paper
#21
sirius777coder
opened
1 year ago
0
Some confusion about the creation of positive and negative sample pairs
#20
USTC-xlab
closed
1 year ago
1
FileNotFoundError: [Errno 2] No such file or directory: './data/esm_data/P24665_0.pt'
#19
zas97
closed
1 year ago
1
No such file or directory: 'results/inputs/init_maxsep.csv'
#18
rams2110
closed
1 year ago
3
ValueError: The number of weights does not match the population
#17
Zachaha
closed
1 year ago
3
add `-y` in quickstart for automatic installation
#16
zhoubay
closed
1 year ago
1
fixed the single EC mutate problem as in issue #13.
#15
canallee
closed
1 year ago
0
Dataset contain duplicate structures
#14
zas97
closed
1 year ago
3
a bug on `random_positive` in `dataloader.py`
#13
1511878618
closed
1 year ago
4
Error when inference with p-value in CPU only mode
#12
AxenArk
closed
1 year ago
2
Gmm
#11
samarthgupta1011
closed
1 year ago
0
No such file or directory: './data/esm_data/WP_063460136.pt'
#10
zas97
closed
1 year ago
1
Error:
#9
AaroncrowAries
closed
1 year ago
2
Request to clarify license
#8
LRParser
closed
1 year ago
1
bad gateway in webserver
#7
itiago
closed
1 year ago
2
There have a problem when we run the command "python CLEAN_infer_fasta.py --fasta_data price"
#6
liaohu1231
closed
1 year ago
6
Question to protein language model
#5
wangleiofficial
closed
1 year ago
1
Change input and output directories for Dockerization and Kubernetes Run
#4
samarthgupta1011
closed
1 year ago
0
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