issues
search
uclahs-cds
/
tool-NFTest
CLI to automate Nextflow pipeline testing
GNU General Public License v2.0
11
stars
1
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Prepare for version `1.2.0`
#77
boutros-lab-infrastructure-owner
closed
1 week ago
1
Prepare for version `1.2.0`
#76
boutros-lab-infrastructure-owner
closed
1 week ago
0
Migrate package configuration to pyproject.toml, establish dynamic versioning
#75
nwiltsie
closed
1 week ago
0
Bump actions/upload-artifact from 3 to 4
#74
dependabot[bot]
closed
1 week ago
1
Bump actions/setup-python from 4 to 5
#73
dependabot[bot]
closed
1 week ago
0
Add release management workflows
#72
nwiltsie
closed
1 month ago
0
Add `--report` flag to save JSON test summary
#71
nwiltsie
closed
2 months ago
1
Catch failing test cases
#70
nwiltsie
closed
2 months ago
0
Prepare for 1.1.0 release
#69
nwiltsie
closed
4 months ago
0
Encapsulate NFTestAssert class, rewrite tests (attempt 2)
#68
nwiltsie
closed
4 months ago
5
Encapsulate NFTestAssert class, rewrite tests
#67
nwiltsie
closed
5 months ago
4
Resolve non-determinism with NFTestENV tests
#66
nwiltsie
closed
5 months ago
0
Standardize code format with ruff
#65
nwiltsie
closed
6 months ago
0
Upgrade to latest static analysis Action
#64
nwiltsie
closed
6 months ago
0
Path in asserts can't be resolved with wildcards
#63
zhuchcn
closed
8 months ago
2
Capture Nextflow logs via syslog rather than console
#62
nwiltsie
closed
10 months ago
1
Reference checksum validation
#61
yashpatel6
closed
10 months ago
2
Add badge for README
#60
yashpatel6
closed
10 months ago
1
Add GitHub action for pytest
#59
nwiltsie
closed
10 months ago
0
Use `shell=False` for subprocess calls
#58
nwiltsie
closed
10 months ago
5
Fix path typing
#57
yashpatel6
closed
10 months ago
0
Resolve full path to output directory in Nextflow command
#56
nwiltsie
opened
11 months ago
1
Print usage when no argument is given, exit with aggregated test status
#55
nwiltsie
closed
10 months ago
1
ANSI logging
#54
zhuchcn
closed
10 months ago
0
Aggregated exit code
#53
yashpatel6
closed
10 months ago
0
Output summary of test results at finish
#52
nwiltsie
closed
1 year ago
1
Allow patterns in file paths
#51
yashpatel6
closed
11 months ago
5
Move linting configuration to .cicd-env file
#50
nwiltsie
closed
1 year ago
0
allow wildcards in assertion paths
#49
sorelfitzgibbon
closed
11 months ago
0
Release `1.0.0-rc.4`
#48
yashpatel6
closed
1 year ago
0
Add labels for expected test resource consumption?
#47
nwiltsie
opened
1 year ago
0
Add CI check using pytest
#46
nwiltsie
closed
10 months ago
1
Fix tests
#45
yashpatel6
closed
1 year ago
0
Check that actual files are modified by pipelines
#44
nwiltsie
closed
1 year ago
6
Potentially separate logger for assertions
#43
yashpatel6
opened
1 year ago
0
Log outputs from custom comparison scripts
#42
yashpatel6
closed
1 year ago
2
Update to using current CI/CD image
#41
nwiltsie
closed
1 year ago
1
Stream NextFlow logs in realtime
#40
nwiltsie
closed
1 year ago
0
Environment variable handling
#39
yashpatel6
opened
1 year ago
0
Fix default setting for `clean_logs`
#38
yashpatel6
closed
1 year ago
2
Add profiles
#36
yashpatel6
closed
1 year ago
1
Add case name to output
#35
yashpatel6
closed
1 year ago
6
Append case name to output directory
#34
yashpatel6
closed
1 year ago
0
Override skip with target
#33
yashpatel6
closed
1 year ago
0
Override `skip` from YAML when test case is specified explicitly from command line
#32
yashpatel6
closed
1 year ago
0
Mock nextflow processes
#31
zhuchcn
opened
1 year ago
1
Release `1.0.0-rc.1`
#30
yashpatel6
closed
1 year ago
1
Test names
#29
yashpatel6
opened
2 years ago
0
Dependency injection for logger
#28
yashpatel6
opened
2 years ago
1
Add tests
#27
yashpatel6
closed
2 years ago
7
Next