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uio-bmi
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immuneML
immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
https://immuneml.uio.no
GNU Affero General Public License v3.0
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2 fixes for bugs that only showed up on Windows
#125
LonnekeScheffer
closed
2 years ago
0
Minor fixes
#124
LonnekeScheffer
closed
2 years ago
1
small fix in import
#123
LonnekeScheffer
closed
2 years ago
0
Fix junction export
#122
LonnekeScheffer
closed
2 years ago
0
added reference encoders as option for sklearn methods
#121
LonnekeScheffer
closed
2 years ago
0
small fix in docs
#120
LonnekeScheffer
closed
2 years ago
0
Matches sum option
#119
LonnekeScheffer
closed
2 years ago
2
Reports MLMethods updates
#118
LonnekeScheffer
closed
2 years ago
0
Parallel reports
#117
LonnekeScheffer
closed
2 years ago
1
added log_scale option to FeatureComparison report
#116
LonnekeScheffer
closed
2 years ago
0
update: make standard dataset name in GalaxyTools 'dataset'
#115
LonnekeScheffer
closed
2 years ago
0
Fix docker dependencies with pystache and fisher packages
#114
pavlovicmilena
closed
2 years ago
0
docs temporary workaround with old version of setuptools
#113
LonnekeScheffer
closed
2 years ago
0
fixed issue: ModuleNotFoundError: No module named Cython
#112
alexwang2013
closed
2 years ago
0
Minor bugfixes
#111
LonnekeScheffer
closed
2 years ago
0
bugfix: color and facet labels did not work
#110
LonnekeScheffer
closed
2 years ago
0
keep_fraction option for FeatureComparison
#109
LonnekeScheffer
closed
2 years ago
0
CompAIRR integration
#108
LonnekeScheffer
closed
2 years ago
1
Morisita horn distance metric + small bugfixes
#107
LonnekeScheffer
closed
2 years ago
0
check encoder-ML method compatibility upon YAML parsing
#106
LonnekeScheffer
closed
2 years ago
0
Bugfix: label positive_class could not be defined in exploratory analysis
#105
LonnekeScheffer
closed
2 years ago
0
Update README.md
#104
LonnekeScheffer
closed
2 years ago
0
perhaps add a warning to users in docs in relevant sections of full sequence implantation that data import by default trims first and last amino acid residues
#103
KanduriC
closed
3 years ago
0
perhaps not fail when not supplying sequence position weights in full sequence implantation
#102
KanduriC
closed
2 years ago
0
Add check to ML parser for positive class setting
#101
pavlovicmilena
closed
2 years ago
0
ValueError: RegionType NaN
#100
KanduriC
closed
3 years ago
1
CompAIRR integration
#99
LonnekeScheffer
closed
2 years ago
1
Bugfixes for Galaxy tools
#98
LonnekeScheffer
closed
3 years ago
0
Safety improvements
#97
pavlovicmilena
closed
3 years ago
0
Add preprocessing option to DatasetExportInstruction
#96
LonnekeScheffer
closed
3 years ago
0
bugfix: if sequence is string of length 0 but not None, this is also considered 'empty'
#95
LonnekeScheffer
closed
3 years ago
0
Bugfixes in DistanceEncoder
#94
LonnekeScheffer
closed
3 years ago
0
more user friendly error for DeepRC method-encoder incompatibility
#93
LonnekeScheffer
closed
3 years ago
0
Update README.md
#92
pavlovicmilena
closed
3 years ago
0
Preprocessing tutorial + SimpleDatasetOverview report + bugfixes
#91
LonnekeScheffer
closed
3 years ago
2
error when exporting evenness encoded data as design matrix
#90
KanduriC
closed
3 years ago
1
Feature comparison report
#89
LonnekeScheffer
closed
3 years ago
1
Motif recovery tutorial
#88
LonnekeScheffer
closed
3 years ago
0
import updates
#87
LonnekeScheffer
closed
3 years ago
0
One hot encoding with nucleotide sequences
#86
pavlovicmilena
closed
3 years ago
0
Deeprc quickfix
#85
LonnekeScheffer
closed
3 years ago
1
Docs updates
#84
pavlovicmilena
closed
3 years ago
0
Updated readme and small docs updates
#83
LonnekeScheffer
closed
3 years ago
0
Docs updates
#82
LonnekeScheffer
closed
3 years ago
0
Documentation updates (user feedback)
#81
LonnekeScheffer
closed
3 years ago
1
column_mapping_synonyms
#80
LonnekeScheffer
closed
3 years ago
0
ImmunoSEQ import fixes
#79
LonnekeScheffer
closed
3 years ago
1
Minor updates
#78
LonnekeScheffer
closed
3 years ago
0
Small updates
#77
LonnekeScheffer
closed
3 years ago
0
likely_confounders
#76
ghadialhajj
closed
3 years ago
4
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