uio-cels NucDiff issues

uio-cels / NucDiff

In-depth characterization and annotation of differences between two sets of DNA sequences

Mozilla Public License 2.0

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issues

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Nucdiff- visualization

#32 aksha19n opened 1 month ago
0
Run time

#31 tdlong opened 11 months ago
3
VCF files not compatbile with vcf-format

#30 cdebuck opened 1 year ago
0
Hello

#29 hassantarabai closed 1 year ago
1
Could not run Nucmer

#28 peflanag opened 2 years ago
1
NucDiff waiting for input ("ku")

#27 schorlton opened 2 years ago
1
ERROR: Could not parse input from 'stdin'. / postnuc returned non-zero

#26 sophie-03 opened 3 years ago
2
Ambiguous ("N") handling and Results interpretation

#25 chrisgulvik closed 3 years ago
2
nucdiff error

#24 rthapa1 opened 3 years ago
3
NuCdiff block after get SNPs

#23 El-Castor opened 3 years ago
7
Would NucDiff work comparing 2 phased assemblies?

#22 ghost opened 4 years ago
0
Confusions about SV results

#21 qiuyixmm opened 4 years ago
2
default override via. --nucmer_opt '--nooptimize' ???

#20 moduff opened 4 years ago
0
Confusion about the definition of inversion

#19 qiuyixmm closed 4 years ago
0
KeyError: 'scaffold00001'

#18 JonEilers closed 4 years ago
3
nucdiff hung when tring to find differences

#17 dbtara closed 4 years ago
9
ERROR: mummer and/or mg aps returned non-zero

#16 Zhiliang-Zhang opened 4 years ago
4
Update setup.py

#15 philres opened 4 years ago
0
ERROR: The provided file with an assembly does not exist

#14 mamora closed 4 years ago
2
problems running nucdiff

#13 mamora closed 4 years ago
0
Mummer4

#12 JonEilers closed 4 years ago
4
possible failure to detect a deletion

#11 dmnfarrell closed 4 years ago
6
Run with no output

#10 davidaray opened 4 years ago
8
why --maxmatch is hard code

#9 slbai01 closed 4 years ago
1
Installation issue? ValueError: Attempted relative import in non-package

#8 ckeeling closed 5 years ago
5
Package Nucdiff for pypi and make py3 compatible

#7 zachcp closed 6 years ago
0
Not able to run NucDiff on an existing .delta file generated by nucmer

#6 pulichandramoulireddy closed 7 years ago
16
uncovered ref regions

#5 jaworskicoline closed 7 years ago
4
same FastA content prints "Differences ... are found"

#4 chrisgulvik closed 7 years ago
1
What version of python (2 or 3) is?

#3 tseemann closed 7 years ago
1
Add to pypi - desire "pip install nucdiff"

#2 tseemann opened 7 years ago
8
Make an updated release

#1 tseemann closed 7 years ago
1