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ukhsa-collaboration
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pygom
ODE modelling in Python
GNU General Public License v2.0
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Branding guidelines
#74
hareball90
closed
1 month ago
3
Add contributor guidelines
#73
hareball90
closed
1 year ago
4
Warning on install
#72
twomagpi
closed
1 month ago
1
CI for python versions
#71
hareball90
closed
1 month ago
3
Installation
#70
hareball90
closed
1 month ago
2
Fix CI
#69
hareball90
closed
1 month ago
2
Need to recompile the pyx files for newer Python?
#68
twomagpi
closed
1 month ago
0
Use of get_transition_graph method causes AttributeError.
#67
m-d-grunnill
opened
2 years ago
0
Checked
#66
m-d-grunnill
opened
2 years ago
0
Updated version for AMR submission.
#65
m-d-grunnill
closed
2 years ago
1
Use of derived_param argument option in intiating mode causes NameError when using R0 function.
#64
m-d-grunnill
opened
2 years ago
0
Problem after update on Ubuntu 22.04/ Python 3.10
#63
lgostiau
closed
1 month ago
1
Occaisonal "TypeError: argument of type ‘bool’ is not iterable" at function tauLeap (line 552) of module pygom.stochastic_simulation.
#62
m-d-grunnill
closed
1 month ago
1
Errors installing pygom on Mac (setup.py generating error)
#61
funkedavid82
closed
1 month ago
2
The passage of time is not a stochastic process: periodic functions may present some dificulty when using .simulate_jump()
#60
m-d-grunnill
opened
2 years ago
2
Switching to state*parameter when defined in transistion object as parameter*state
#59
m-d-grunnill
opened
2 years ago
1
A colleague reported a few issues with installing on a Mac.
#58
m-d-grunnill
opened
2 years ago
0
Cannot function pygom.R0() thoughs erroe if model is defined by ODE type transitions.
#57
m-d-grunnill
opened
2 years ago
1
Cannot install via ```python setup.py install``` if using setuptools-scm for getting version.
#56
m-d-grunnill
closed
1 month ago
3
List of required packages needs updating in readme and yml file. Also prerequisite of Microsofts C++ compiler could do with a mention.
#55
m-d-grunnill
closed
1 month ago
1
DFE (and hence R0) fails for conservative systems
#54
timothywhiteley
opened
3 years ago
1
ABC parameter order
#53
jontycarruthersphe
closed
1 year ago
0
Graphical model creation
#52
twomagpi
opened
3 years ago
0
Differential equation calculation
#51
mathwyz
opened
4 years ago
0
Mg loss funcs
#50
MGrunnill
opened
4 years ago
0
SquareLoss with non-empty Target_State leads to failed minimize via .costIV
#49
js1200
opened
4 years ago
1
Copy transitions within the stochastic framework
#48
hareball90
opened
4 years ago
1
Cythonisation of firstReaction
#47
trdurrant
opened
4 years ago
0
Opt
#46
trdurrant
closed
4 years ago
1
Include parameter class & improve plotting
#45
jontycarruthersphe
closed
4 years ago
4
MLE fitting only estimates maximum likelihood with regards to prediction not spread around prediction.
#44
MGrunnill
opened
4 years ago
0
Negative Binomial and Gamma loss functions added
#43
MGrunnill
closed
4 years ago
2
Adding Github actions as CI to verify Windows and MacOS
#42
edwintye
closed
4 years ago
1
An attempt to improve travis and provide coverage
#41
edwintye
closed
4 years ago
1
CI setup convoluted and not useful
#40
edwintye
closed
1 month ago
1
PyGOM and a function no longer within Scipy
#39
MGrunnill
closed
1 month ago
2
Initial time value
#38
hareball90
closed
4 years ago
0
Confidence interval calculations not working
#37
hareball90
closed
4 years ago
2
create a stocastic system from a deterministic
#36
twomagpi
closed
1 month ago
1
Improved helpfulness of error message
#35
hareball90
closed
4 years ago
1
RecursionError when unpickeling ode objects
#34
twomagpi
closed
4 years ago
0
import fails on Win10 with Python 3.8 and scipy 1.4.1 on fresh install
#33
twomagpi
closed
4 years ago
1
Add a simple serialisation scheme for PyGOM models
#32
twomagpi
opened
5 years ago
2
Update verion on pypi
#31
twomagpi
closed
4 years ago
1
Stochastic simulation could do with a break clause if specified populations reach 0.
#30
MGrunnill
closed
1 month ago
4
Parameter values from the simulate_param method
#29
hareball90
opened
5 years ago
1
Documentation build
#28
hareball90
closed
5 years ago
1
Typesetting of equations in Jupyter notebook
#27
hareball90
opened
5 years ago
1
Broken plotting function
#26
hareball90
closed
5 years ago
1
Creating environment with yaml file
#25
hareball90
closed
4 years ago
3
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